Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1621 ATGGAGGAGATGTCATTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTTGTTCAGTCTGTGATAACACAACCATAGTTCCCCACATGGATGTATCCAGGTTTAAGCTGATGGCGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACCAAGACAGTTGCAGGTTCCGATGATTGTGATGATAGTGGCAATTTAGAGGATGAAGCTGGAATTACTGAGGTTATACCACCAAAACAGGATAGAGAAGGAGAGAATCCTGTGTTAGATATGATATCTGAAGATAGAAGCACTTTGGTTGGTGATGAAGTGTTAGCCGATGAAATTGAGGAAGATTCATTGTCATTGGAAGGTGATCAGGTTGTTGATAGCTCATGTTCTCTTTCGGCAGTCAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTGTGTTTCGATGCTACTTCAGATGTTGGGACACCATTTTCTGCTTATGTAGATAAGAGCATTGGTGCTGTCAATATTGCTGCCGAGGCAGTTGATTTGGAGGAATCAAATGTTGACACAGATATTACAACAGAACCTCTTGCTGCGGCAGTGAGCCTTGAAGAAGAGAATGGAATTAGAACTGGCCCTAAGCCTTCTGATGCCGTTCTTCATCAGTTGCCTCAGGAAAAGGGGGTGAGTGGAATGGTTGGTCGGAGTGTTTTTGAATTGGATTATACCCCACTTTATGGATTCATATCTGTGTGTGGAAGAAGACCTGAGATGGAGGATGCACTTGCAACTGTACCTCGATTTATGAAAATTCCTATTCAGATGCTAATTGGTGATCGGGTGCTTGATGGAATAAACAAGTGTTTTAGTCAGCAGACGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCAAGATCGTATCCACAAGGCTTTGGCCGAGGAAATAGAATTTTTCAAGGAAGCTCTAATCAGTGGAAGTATGAAGGAAGGTTGTCAAGATCAGTGGAAAAAAGCTTTAACCAATTGTTTCATAAAGGTTGATGCTGAAGTTGGAGGGAAAGTTGATAATGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTGTTATTTGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATTGCATTATCGGTGGACCATAAACCCAACCGACCTGATGAGTATGCAAGAATTGAGGCAGCTGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATCGGTGATAGATATTTGAAGCCATGGATTATTCCAGAACCAGAAGTTAAATTTCTTCCCCGCACAAAAGACGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTGATGACGAACGAAGAGGTGTGTGATCTTGCCCGGCGACGGATAGTTCTCTGGTACAAGAAAAATGGCTTGGAACAACCATCGTCAGAAAGGGGAGAGGGAGTTGATCCTGCTGCACAAGCAGCAGCAGAATACCTATCAAACCGTGCACTTCAGAAAGGAAGCAAAGATAACATCACCGTGATTGTGATTGATTTGAAACCCCAAAGGAAATATAAGAGCAAGTCATGA 1665 0.43 MEEMSFVVAVPLRVGNCCSVCDNTTIVPHMDVSRFKLMADTGLLSNSVTKVFTKTVAGSDDCDDSGNLEDEAGITEVIPPKQDREGENPVLDMISEDRSTLVGDEVLADEIEEDSLSLEGDQVVDSSCSLSAVSENSSVCGEESLCFDATSDVGTPFSAYVDKSIGAVNIAAEAVDLEESNVDTDITTEPLAAAVSLEEENGIRTGPKPSDAVLHQLPQEKGVSGMVGRSVFELDYTPLYGFISVCGRRPEMEDALATVPRFMKIPIQMLIGDRVLDGINKCFSQQTTHFFGVYDGHGGSQVAKYCQDRIHKALAEEIEFFKEALISGSMKEGCQDQWKKALTNCFIKVDAEVGGKVDNEPVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKEPIALSVDHKPNRPDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVKFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRIVLWYKKNGLEQPSSERGEGVDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKPQRKYKSKS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1621 554 Gene3D - 226 554 IPR036457 -
Vra6g1621 554 Pfam Protein phosphatase 2C 274 537 IPR001932 -
Vra6g1621 554 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 103 553 - -
Vra6g1621 554 CDD PP2Cc 240 544 IPR001932 -
Vra6g1621 554 ProSiteProfiles PPM-type phosphatase domain profile. 239 544 IPR001932 -
Vra6g1621 554 SUPERFAMILY PP2C-like 232 546 IPR036457 -
Vra6g1621 554 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Vra6g1621 554 PANTHER ALPHABET, ISOFORM E-RELATED 103 553 - -
Vra6g1621 554 SMART PP2C_4 227 542 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1621 Vra-Chr6 31870470 31875453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1621 1 554 PP2C-type Phosphatase Gene Family AT1G17550 46.996 3.81e-161 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1621 K14497 - gmx:100805281 965.296