Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1619 ATGTCGTCAGTTTATGTTCTAGAACCTCCGACAAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGACCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAATTATTACGACAACACTATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGGTGGCGACCCCACCGGCTCTGGCACCGGAGGTGAAAGCGTTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAATGCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTAGATCGTTGTGACTGGCTTGATCGCAAGCATACCATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAACGACCGGCCTTTAGATCCGCCAAAAATTTTATCAGTCGAGGTGTTGTGGAATCCATTTGAAGATATTGTTCCAAGAACACTACAGAAATCTCGGACTGAAGCTAGAGTTGATACTGAAAGTAAAGAACCAAAGAAGAAAGGTGTCAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCGTCAGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAATACCTGATAGTGAATTGAGTACGTCAAGAAGAGATTTGCAGCTGTCTGTTAGGGAGACACTTAACGCAAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTGCTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCGAAGCCTAAGTTGCAAAAAGCAGGAAGATCCATTCCAGAGAATCATGATACGTCAGCACTAAGGTCCAATGCTGCTAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGTGTGGGATCTGAAGCAAGAGCTGAAAGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGTCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAATTCTTTAGCAGCAAAGGAGACACTCCCAGCTAGCGAATCTGAAGATGTTAAAAATGAGGATTTGTCTGACTGGAAAGGTGTCAGTTTAAAATTTGCCCCCGAGTCTGGCAAGGACCGCATGTCACGTAATGAGGACCCAAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGGAAAGAAAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1479 0.4375 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQGGDPTGSGTGGESVYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTEARVDTESKEPKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEEIPDSELSTSRRDLQLSVRETLNAKKEEPQKDSAPANIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQKAGRSIPENHDTSALRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSLAAKETLPASESEDVKNEDLSDWKGVSLKFAPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1619 492 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Vra6g1619 492 MobiDBLite consensus disorder prediction 263 292 - -
Vra6g1619 492 CDD cyclophilin_CeCYP16-like 8 179 - -
Vra6g1619 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 MobiDBLite consensus disorder prediction 378 397 - -
Vra6g1619 492 MobiDBLite consensus disorder prediction 443 492 - -
Vra6g1619 492 MobiDBLite consensus disorder prediction 305 360 - -
Vra6g1619 492 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vra6g1619 492 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
Vra6g1619 492 Coils Coil 206 233 - -
Vra6g1619 492 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Vra6g1619 492 MobiDBLite consensus disorder prediction 444 492 - -
Vra6g1619 492 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Vra6g1619 492 MobiDBLite consensus disorder prediction 324 338 - -
Vra6g1619 492 Gene3D - 2 182 IPR029000 -
Vra6g1619 492 MobiDBLite consensus disorder prediction 341 360 - -
Vra6g1619 492 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1619 Vra-Chr6 31826498 31833696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1619 9 172 U-box Gene Family AT5G67530 46.951 3.49e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1619 K12737 - gmx:100793148 831.632