Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra6g1618 | ATGTCTTCTAATGCCGACTCCACCACGTCGCAGCTCTTGAATGTCACCATGGTAGCCGTTGACAAAGGCAAGAGCTGCGCCCACGCCTTTCGTTGGACCATCAAAAACATAGACAACCCCGTCATCATCGCACTCCATATCAAACACAAAAACATTACTCATCAGAGCATCGATGCTGTACCTCCCGACGAAGACGATGTAGCACATGTTTTCAACCACTTACGTCAAATGTGTCAAGGCAACAATGTTCAGTTGAAAGAAGCCGTGATCCATGACAGTGATATTGTGAGAGGAATAGTGGAATATGCACAGAGAAATCGCGTGAATACTATAGTCGTTGGTGCAGGCTCCTCCAACAAGACTAGTTTTGCAAGAAGTCTTTACCTGAGGAGTGGAAGCAAAAAATTAAAAGGCCATGTGTCAACAGGCGTAATGAAATCAGCACCAGATCATAGTTCTGTGTTTGTGATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGACCGATGGTAAACATGGTTCAACCACCAAGTGAACATGCAAAAAGTGAGAACAGGACACATGGAATTAGAAGTGGGAGCACCAATGGAAGATCAGAAAGATCACTTGTACTTGAAATGGCAAGGTCTTCTTCAGTCGGTCAATCAACGGAACACAGGTTAATATTTTGCCACAGCTCGGATGGAACTGACTCTTCAAAGTCGAACAAGTTAGTGTCATCAGATGGAATTAGACAAGAGTGCGATCTATCAGATTCTCAATTCACGGAAGAGATGGAGAGTGAGATGAAAAGGTTGAAGCTCAAACTGAAACAAACTATGGACATGTTGAGTTCAGCTTGCAAAGAAGCAGTGTCAGCCGAAAGCAAGGCTAAAGAGATTAACCAACGGAAACTGGACGAGGAACGTATAGCTGAGGTGGCTAAGTTGTCTAAAGAGGCAGCACTTGCATTGGCAGAAAAGGAGAAAGTTAAAGCCAAAGCTGCATTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAGAGAAGATTTAATGCAGAGATGAAGGCCAGAAGAGAGGCACATGAAAAGGATCGAGCATTGAATCAGTTGGCATGTAGGGAAATTCGATGCAGAAAATACAGTATAAGCGATGTTGAAGAGGCCACTCATAAGTTCTCCCCAGCATTGAAAGTAGGTGAAGGTGGATATGGACCCGTCTTTAAAGGCCAACTTGATCACACCCAAGTAGCAATCAAAATTTTGAACCCTGAAGCTACCCACGGAAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTTCTCCTCATTGGTGCATGTCCTGAGTACGGATGTTTAGTGTATGAGTACTTAGAGAATGGTAGCTTAGAAGATAGATTACTGAGGAAAAATGATAGCCCTCCAATTCCATGGTGGAAACGATTTGAAATAGCTGCTGAGATTGCAACTGCACTTCTTTTCCTTCATCAAACAAAGCCAGAACCAATTGTGCACAGGGACCTCAAACCTGCCAACATTCTCTTGGACAGGAATTTTGTGAGCAAAATCAGTGATGTGGGTCTTTCAAGACTAGTGCCAGCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCTGCTGCTGGAACCTTTTGTTACATTGACCCTGAGTACCAACAAACTGGGATGCTAACAACAAAATCAGACGTATACTCATTGGGGATAATGCTTCTACAAATCATCACAGCCAAGGCTCCAATGGGGCTTGCTCACCATGTTCTGAAGGCCATTGAAGAGGGAACATTTTCAGAAATGCTCGATCCTTCGATCAATGATTGGCCCCTTGAAGAGACTCTTGAATTTGCCAAACTGTCACTGAAATGTGCAGAGCTCAGCAAAAAGGACAGGCCTGATCTTGCAACCGTGGTTGTGCCAAAGCTTAATCAGTTGAGAGAGTTTGGGTTAGCATCACATAACAAGCTGAATCATAGTCACCCTCAACTTCCTCTCTCGCCTACAAGAACTCATCTATCGGATCCATAA | 2067 | 0.4407 | MSSNADSTTSQLLNVTMVAVDKGKSCAHAFRWTIKNIDNPVIIALHIKHKNITHQSIDAVPPDEDDVAHVFNHLRQMCQGNNVQLKEAVIHDSDIVRGIVEYAQRNRVNTIVVGAGSSNKTSFARSLYLRSGSKKLKGHVSTGVMKSAPDHSSVFVISKGKIVGARPAIRPMVNMVQPPSEHAKSENRTHGIRSGSTNGRSERSLVLEMARSSSVGQSTEHRLIFCHSSDGTDSSKSNKLVSSDGIRQECDLSDSQFTEEMESEMKRLKLKLKQTMDMLSSACKEAVSAESKAKEINQRKLDEERIAEVAKLSKEAALALAEKEKVKAKAALEAAEEAIKMVEKEAQRRFNAEMKARREAHEKDRALNQLACREIRCRKYSISDVEEATHKFSPALKVGEGGYGPVFKGQLDHTQVAIKILNPEATHGRRQFQQEVEVLCSIRHPNMVLLIGACPEYGCLVYEYLENGSLEDRLLRKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLSRLVPASVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDVYSLGIMLLQIITAKAPMGLAHHVLKAIEEGTFSEMLDPSINDWPLEETLEFAKLSLKCAELSKKDRPDLATVVVPKLNQLREFGLASHNKLNHSHPQLPLSPTRTHLSDP* | 689 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra6g1618 | 688 | Coils | Coil | 258 | 278 | - | - | |
| Vra6g1618 | 688 | MobiDBLite | consensus disorder prediction | 178 | 203 | - | - | |
| Vra6g1618 | 688 | Coils | Coil | 309 | 352 | - | - | |
| Vra6g1618 | 688 | Gene3D | HUPs | 4 | 159 | IPR014729 | - | |
| Vra6g1618 | 688 | ProSiteProfiles | Protein kinase domain profile. | 392 | 676 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vra6g1618 | 688 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 510 | 522 | IPR008271 | GO:0004672|GO:0006468 | |
| Vra6g1618 | 688 | MobiDBLite | consensus disorder prediction | 668 | 688 | - | - | |
| Vra6g1618 | 688 | Pfam | Protein tyrosine and serine/threonine kinase | 397 | 651 | IPR001245 | GO:0004672|GO:0006468 | |
| Vra6g1618 | 688 | Pfam | Universal stress protein family | 17 | 148 | IPR006016 | - | |
| Vra6g1618 | 688 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 17 | 142 | - | - | |
| Vra6g1618 | 688 | SMART | serkin_6 | 392 | 655 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vra6g1618 | 688 | Gene3D | Transferase(Phosphotransferase) domain 1 | 465 | 671 | - | - | |
| Vra6g1618 | 688 | CDD | STK_N | 15 | 160 | - | - | |
| Vra6g1618 | 688 | SUPERFAMILY | Protein kinase-like (PK-like) | 373 | 651 | IPR011009 | - | |
| Vra6g1618 | 688 | PANTHER | ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE | 9 | 683 | - | - | |
| Vra6g1618 | 688 | Gene3D | Phosphorylase Kinase; domain 1 | 361 | 464 | - | - | |
| Vra6g1618 | 688 | PANTHER | OS02G0152300 PROTEIN | 9 | 683 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra6g1618 | Vra-Chr6 | 31818834 | 31822651 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra6g1618 | 85 | 662 | Receptor kinase-like Gene Family | AT5G12000 | 56.331 | 0.0 | 637 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_RLCK-IXb | Vra6g1618 | PK_Tyr_Ser-Thr | 5.9e-41 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra6g1618 | - | - | var:108336981 | 1281.93 |