Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1616 ATGAGTTCTAGAAGACAAGGAATCTCCCACAACTTTTCTCTAGGTGAATCAGAAGTAGCTTGTGAAAGAAAGTTACAGAGCAGGGTTGTTGCAGTTTCACACATAGACCAAATGAGTACTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGGTCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGCTCTAAACTTTATGCATTTACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGATAAACTTAGGCCAGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGACTGTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGGATAATGGGAACACAAGGATACGCTGCTCCTGAGTACATAATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGTTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGCAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAACTTTATAGCATCATAGATTGTAGACTAGAAGGACAATTTCCCATGAAAGGAGCGATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTATTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGGTAACAAACATAAAATATAG 1227 0.4295 MSSRRQGISHNFSLGESEVACERKLQSRVVAVSHIDQMSTKRNTWKSVILILGCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDLSISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRKYSAAMPWSTRMKIALGAAKGLVFLHESDKPDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKLYSIIDCRLEGQFPMKGAMKVAMLAFKCLSPHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGNKHKI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1616 408 Gene3D Phosphorylase Kinase; domain 1 79 200 - -
Vra6g1616 408 SUPERFAMILY Protein kinase-like (PK-like) 95 381 IPR011009 -
Vra6g1616 408 Pfam Protein tyrosine and serine/threonine kinase 120 380 IPR001245 GO:0004672|GO:0006468
Vra6g1616 408 PANTHER KINASE 1B 58 405 - -
Vra6g1616 408 PANTHER OS01G0588500 PROTEIN-RELATED 58 405 - -
Vra6g1616 408 Gene3D Transferase(Phosphotransferase) domain 1 201 390 - -
Vra6g1616 408 ProSiteProfiles Protein kinase domain profile. 118 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1616 Vra-Chr6 31790081 31792594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1616 106 380 Glycoside Hydrolase AT3G07070 48.123 3.66e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra6g1616 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1616 - - gmx:100802636 709.138