Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1611 ATGGTGAAACCGGCCATTACCAGAGTTGATTCTTCTTCTTCTTCCTCTTCTTCTCCCACTTCTTGCAATGACGCATTCTCCAGTGCCGCCTGCAAGATGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATTCGGCTTCCAAACAGCCGTGAGCGTATATGGTTGGGCTCTTACGACACGCAAGAGAAGGCAGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCCAGTTTCAACTTCCCCGACACGCCTCATCTCTTCGAAATGGAGTCGCTCAAGATACCCTGCAGGCACCAAGAGATCCAGGAGGTGGCGGCCAAGTTTGCGAACAAGGTGGTGGAGATTTTGGCAGAAGAAGAAGAAGAAGAAGAAGATGGAGAAGTTGGAGTTCAGAGTGAGTCTATGTCTGACCACACCACACACACAGAAACAAACAGGAGCTTTCCTATTTATGATGGTGGGACAAACAATGATGTCGGAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGGCTCCGATTTTGGCCTCTATTTTGAAGCAGAGAAGGGTGAGTTTTTGTGCCCCACAACACACACTCCACTACTCTTTCACAATGGAGATGAGATTGAAGTTGATGATCATGATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 726 0.4683 MVKPAITRVDSSSSSSSSPTSCNDAFSSAACKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKGASFNFPDTPHLFEMESLKIPCRHQEIQEVAAKFANKVVEILAEEEEEEEDGEVGVQSESMSDHTTHTETNRSFPIYDGGTNNDVGVDQDTMDWTFMNMLDDLNGSDFGLYFEAEKGEFLCPTTHTPLLFHNGDEIEVDDHDDHDAFSNHSFLWSWNF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1611 241 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 12 241 - -
Vra6g1611 241 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 MobiDBLite consensus disorder prediction 7 23 - -
Vra6g1611 241 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g1611 241 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vra6g1611 241 MobiDBLite consensus disorder prediction 141 164 - -
Vra6g1611 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 241 - -
Vra6g1611 241 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vra6g1611 241 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vra6g1611 241 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1611 Vra-Chr6 31702044 31703256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1611 27 188 AP2-EREBP Transcription Factor Family AT1G74930 47.561 8.04e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g1611 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1611 - - pvu:PHAVU_001G044500g 324.324