Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1606 ATGGAATCGGAGGATTTGGTGAAACAGGAATTGGAGGAATTGCTTAAACAATTGGGGAAGAAGCAAAGGTTTGAATCCTCTGTTTTGGCCCTCAAATCCCTTCTCCAAAGCTCATATCCTTCAGCTTCTCCATCGCTTCGCCAATCCTTTTATTCAGTTATTTGCCGAGTTGCTACTGTGTTGAAGACGAGATATACAGCACCAGGTTTCTGGAATGCTGGACTGGGACTTTTTGAGCTGGCATATTTGCTTGTTTCTGAACCTTCTGAGAAGGAACACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACACTTGCATCTGGAAGACAATCCATCACTACAAGCTTCACAACTTGCAGATAATCAAGCACATAGAGGATACCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCTCCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCCGAATCTTCCCAAGCTTCTGCAGAAAATGGAACCACCCAAGAGGATGCAGCCAATATTCTTCAAGATCTTATAAATAGATTGGAGGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTGTAGCTCCGAGAGCCCCTCCTGCCAGTAAAGAGGTTGTGGCAAAACTTCCAGTCATCACTCTCACAGAGGAAATCCTGGCTACTTTGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAAAACTTAATTTTAAATGATAAAATGCAAGAGTTGCCATGCAAACACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGTATGAGCTGCAAACTGATGATCATGCCTATGAAAGCTGGAAGGAGCGAGAAAAGGAAGCTGAAGAGGAGAGAAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATATATGTATGTTTAA 945 0.4487 MESEDLVKQELEELLKQLGKKQRFESSVLALKSLLQSSYPSASPSLRQSFYSVICRVATVLKTRYTAPGFWNAGLGLFELAYLLVSEPSEKEHLKACIAQAREHLHLEDNPSLQASQLADNQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQASAENGTTQEDAANILQDLINRLEEVVPLMVDEGTVAPRAPPASKEVVAKLPVITLTEEILATLGKDAECAICRENLILNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1606 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Vra6g1606 314 Coils Coil 1 21 - -
Vra6g1606 314 Coils Coil 285 305 - -
Vra6g1606 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Vra6g1606 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 308 - -
Vra6g1606 314 Pfam Ring finger domain 233 275 IPR001841 -
Vra6g1606 314 SMART ring_2 234 274 IPR001841 -
Vra6g1606 314 PANTHER ABI3-INTERACTING PROTEIN 2-1 7 308 - -
Vra6g1606 314 SUPERFAMILY RING/U-box 228 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1606 Vra-Chr6 31617891 31621226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1606 7 314 C3H Transcription Factor Family AT5G20910 64.935 6.57e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1606 K16274 - gmx:100798732 523.857