Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1601 ATGATAACTTGGAACCTGTTGCACGCAAGAATAAGTTGGACACACGCAATAGCGCTATTATTTCTTCATTTTTTGTTGTTGGTCAAAGAAATAGTACCTGGAAGCCCTGAATATTCAAGCTGTGATATGGGGTACCTCAATTCAGTCTTATCCTCTTCAGGCCAGGTTCATGCCACAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGATGGCGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGAGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATCAGACATCCAAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCATATAACCATACCGACTCTGAGTTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACAGCCATTCTTGTTGGAGATCGTTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCCCGAGATCACAAGCCGGACCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTCATATTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTTCCATGATTAAACCGATTCCGGACGCGGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATACCAGAGAGGTAGTTCTGACAACATTACATGCGTGGTTGTTCGTTTCTTGTCGAACCAAGGTGCTTCTTCTCACAGTAACTCTGGCTAA 1008 0.4435 MITWNLLHARISWTHAIALLFLHFLLLVKEIVPGSPEYSSCDMGYLNSVLSSSGQVHATEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVSMIKPIPDAEEAAKRLMQEAYQRGSSDNITCVVVRFLSNQGASSHSNSG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1601 335 Gene3D - 68 328 IPR036457 -
Vra6g1601 335 SMART PP2C_SIG_2 71 322 IPR001932 -
Vra6g1601 335 CDD PP2Cc 75 322 IPR001932 -
Vra6g1601 335 ProSiteProfiles PPM-type phosphatase domain profile. 76 322 IPR001932 -
Vra6g1601 335 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Vra6g1601 335 SMART PP2C_4 66 320 IPR001932 -
Vra6g1601 335 PANTHER ALPHABET, ISOFORM E-RELATED 45 331 - -
Vra6g1601 335 Pfam Protein phosphatase 2C 105 315 IPR001932 -
Vra6g1601 335 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 45 331 - -
Vra6g1601 335 SUPERFAMILY PP2C-like 70 322 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1601 Vra-Chr6 31528698 31533758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1601 43 334 PP2C-type Phosphatase Gene Family AT4G31750 90.411 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1601 K17506 - gmx:100795017 630.557