Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1584 ATGTTTGTCCTGGAGAATGGTGCCAAGAAGGGGGAAGACCCAAGGCTTCAAGCCATCTCCCAAGCCATCAGAGTCGTCCCTCACTTCCCCAAACAAGGAATAATGTTTCAAGACATAACAACATTGTTGTTGGATCACAACGCCTTCAAACACGCGGTTGACATTTTTGTTGATCGTTACAGAGACATGGATATTTCTGTTGTTGCTGTTAGGAAATGTTGGCTTTTATTGGTTTACATGCTAATGCAATTGGATTGGATTGGATTATATGAAGGGGTTGAAGCCAGGGGATTCATTTTTGGTTCCTCAATTGCGTTAGGCATTGGTGCCAAGTTTGTTCCTTTATGCAAACCTGGGAAGCTGCCAGGGGAAGTAATTTCTGAAAAATATGTTCTGGAATATGGCACTGATTGTTTGGAGTTGCATGTTGGGGCTGTTCAGTCCAGTGAACGTGTCATAATTATTGATGATTTGGTGGCCACAGGTGGAACTCTATCAGCAGCAATTAGACTTCTAGAAGTTGCTGGTGCTGAAGTAGTGGAGTGTGCTTGTGTGATTGGTCTCTCTGATCTCAAGGTAGGAAGCAAGCTTAATGGAAAGCCACTTTATATCCTTTTGGAGCCACGTCAAGCAGAAAATGGTTATTGA 648 0.4306 MFVLENGAKKGEDPRLQAISQAIRVVPHFPKQGIMFQDITTLLLDHNAFKHAVDIFVDRYRDMDISVVAVRKCWLLLVYMLMQLDWIGLYEGVEARGFIFGSSIALGIGAKFVPLCKPGKLPGEVISEKYVLEYGTDCLELHVGAVQSSERVIIIDDLVATGGTLSAAIRLLEVAGAEVVECACVIGLSDLKVGSKLNGKPLYILLEPRQAENGY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1584 215 Hamap Adenine phosphoribosyltransferase [apt]. 19 208 IPR005764 GO:0003999|GO:0005737|GO:0006168
Vra6g1584 215 Gene3D - 6 208 IPR029057 -
Vra6g1584 215 SUPERFAMILY PRTase-like 22 199 IPR029057 -
Vra6g1584 215 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 12 70 - -
Vra6g1584 215 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 87 212 - -
Vra6g1584 215 CDD PRTases_typeI 92 207 IPR000836 -
Vra6g1584 215 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 87 212 - -
Vra6g1584 215 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 12 70 - -
Vra6g1584 215 Pfam Phosphoribosyl transferase domain 134 186 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1584 Vra-Chr6 31273727 31276521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1584 12 207 PRT Gene Family AT1G27450 59.694 6.23e-77 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1584 K00759 - gmx:100775389 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1584 6 31273727 31276521 Vra6g1584 6 31273727 31276521 ECH
Vra5g1218 5 18561871 18565487 Vra6g1584 6 31273727 31276521 ECH
Vra6g1584 6 31273727 31276521 Vra5g1218 5 18561871 18565487 PCT