LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1581	ATGGGGAAGCCGGCGGGTAAAAAGAAAGATCATGAGATTCCCGCTCCCACCACGAGGGCGAACGGTCACCACCAGCCGACAAAATCATGGGAGGAGAAACGAGGGGCGCCGGCGGCGGCTGCTTCGTCTTCGTCGGCGTCGTCGAAGGTGCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCATGAGCTTCGAGAGGAAGGGAACCGGTTGTTTCAAAGGAAGGACCACGAGGGAGCGATGTTGAAGTACGAAAAGGCGCTGAAGCTTCTGCCGCGGAACCACATCGACATGGCGCACCTCCACACCAGCATGGCCATCTGCTACATGCAGCTGGGACTGGGCGAGTACCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACCAAGGCGCTGCTGAAGCGGGCCAAGTGCTACGAGGCGCTCAACCGCTTGGACCTGGCGATGCGGGACGTGCGCGTGGTTCTGAATTTGGAGCCCAATAACTCCACGGCGCTGGAGGTTTTGGATAGCTTGAGGGGGACGATGGAGGAGAAAGGGATTGTGATTGATGAGACTGAGATAGCCCTCGCGGCGCTTCAGCAGCATCCGGAGCCGCCGTCGGCGCGGTTGAGGAAGGTGGTGAGGGAGAAGATCAAGAAGAATAAGAAGGAAAACAAGGGGGAGGATGAGGGGAAGGCGAAGAAGATTATCGTTGAAGAGAAGGTTAAGGCTGATAATGTTAGGAAAAAGGACAAAGAGAAATCGGGGAAAGTGGAGAAGGGAAAATTGGGCAAGGAAGATAAAGGGAAATTGGCGAAGGAAGATAAAGGGAAATTGGCGAAGGAAGACAAAGGGAAATTGGGGAAAGAAGAGAAACAGAATTTGGGGAAGGAAGAAAAAGAGAAATTGGGGAAAGAAGAAAAAGGGGGTGTTACTAGGACTGTGAAGTTGATATGTGGAGAGGATATTAGATGGGCGCAATTGCCTGTGAATTGTGGAATTAGGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTGAAGGGTGTTCTTGTGAAGTACAAGGACAGGGAGGGTGATTTGGTTACTATAACTAATACTTCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGGTCGATTCGGCTTTATGTGACCAAGGTTGAGCCGGAAGAGGAGCCATTTTATGATGATGGGGTTGTGGTGGATGGTGAAAAGGTGAAGGTGGTTGAGAATGGGAATGGAGGTGTGGGGAAGGGGAGGAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGATTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATACAGTGACAAGTGAGGATGCTCAGGAGCTGTTTGAGATTGCTGCAGATAGGTTTCAGGAGATGGCGGCTTTAGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTCTTACGGAGGATGGATCGAGGGATTCTTCGTTTGAGTGTATTCAAGCTGCTTATGAATGGGCTCAGAAGGAGTATATGAAAGCAGAGAAGAGATTTGGAGAGGCTGTTAGGATCAAACCAGATTTTTATGAAGGGCTTCTTGCTCTAGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGACTGCAACCGAGAAGGATTTAGAAGTCAGCCATGCGGATGAGGTTGTGGAGCTCTTTAACAAGGCTGAAGACAACATGGAGAAAGGCATGATGATGTGGGAGGAGATGGAGGAGCGGCGATTGAATGGACTGTCCAAAACGGATAAGTATAAAGAGCAGCTAGAGAAAATAGGGTTGCATGGTCTTTTCAGGGATGTTTCTGCTGATGAAGCTGATGAACAGGCTGCAAAGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTGGCTGGAGCTTCAACAACTGATATTGGGGTCATGATAAAGAATCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCACTGTTCCGTCGGCGGGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA	2280	0.4904	MGKPAGKKKDHEIPAPTTRANGHHQPTKSWEEKRGAPAAAASSSSASSKVLDEDTAMFINMSHELREEGNRLFQRKDHEGAMLKYEKALKLLPRNHIDMAHLHTSMAICYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRGTMEEKGIVIDETEIALAALQQHPEPPSARLRKVVREKIKKNKKENKGEDEGKAKKIIVEEKVKADNVRKKDKEKSGKVEKGKLGKEDKGKLAKEDKGKLAKEDKGKLGKEEKQNLGKEEKEKLGKEEKGGVTRTVKLICGEDIRWAQLPVNCGIRLVRDVIRDKFPGLKGVLVKYKDREGDLVTITNTSELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGVVVDGEKVKVVENGNGGVGKGRSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDTVTSEDAQELFEIAADRFQEMAALALFNWGSVHMSRARKRVSLTEDGSRDSSFECIQAAYEWAQKEYMKAEKRFGEAVRIKPDFYEGLLALGHQQFEQARLCWCYLTATEKDLEVSHADEVVELFNKAEDNMEKGMMMWEEMEERRLNGLSKTDKYKEQLEKIGLHGLFRDVSADEADEQAAKMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF*	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1581	759	Gene3D	Tetratricopeptide repeat domain	59	187	IPR011990	GO:0005515
	Vra6g1581	759	ProSiteProfiles	PB1 domain profile.	313	391	IPR000270	GO:0005515
	Vra6g1581	759	SMART	tpr_5	518	551	IPR019734	GO:0005515
	Vra6g1581	759	SMART	tpr_5	136	169	IPR019734	GO:0005515
	Vra6g1581	759	SMART	tpr_5	100	135	IPR019734	GO:0005515
	Vra6g1581	759	SMART	tpr_5	62	95	IPR019734	GO:0005515
	Vra6g1581	759	MobiDBLite	consensus disorder prediction	249	307	-	-
	Vra6g1581	759	PANTHER	PROTEIN PHOX4	1	758	-	-
	Vra6g1581	759	MobiDBLite	consensus disorder prediction	1	48	-	-
	Vra6g1581	759	Pfam	PB1 domain	313	389	IPR000270	GO:0005515
	Vra6g1581	759	ProSiteProfiles	TPR repeat profile.	62	95	IPR019734	GO:0005515
	Vra6g1581	759	ProSiteProfiles	TPR repeat profile.	136	169	IPR019734	GO:0005515
	Vra6g1581	759	CDD	PB1	315	388	-	-
	Vra6g1581	759	PANTHER	PROTEIN CLMP1	1	758	IPR044517	-
	Vra6g1581	759	SUPERFAMILY	CAD & PB1 domains	313	399	-	-
	Vra6g1581	759	Gene3D	-	306	390	-	-
	Vra6g1581	759	SUPERFAMILY	TPR-like	63	566	IPR011990	GO:0005515
	Vra6g1581	759	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vra6g1581	759	SMART	PB1_new	313	391	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1581	Vra-Chr6	31201294	31205634	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g1581	52	169	Calmodulin-binding Proteins	AT3G25230	29.134	3.09e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g1581	-		-	vra:106765155	1317.75