Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1571 ATGGGAAAACAGTGGTCTCTCTTCAGTGTTATGGATACCCTTTTGTTGTGTGTCCTTCTTTCGTCTGAAGTAGTTTTGACTAGTATTCTTAGGGTTGGCAAAACCGATCCGCCGATTGAAGGTTCTCAAATGAATTGGATTGACAAGAACGGCATTTTGCTTGTTTCATACAAAGGAGAATTTGGATTTGGCTTTGTCACCACTTCAAAAGACACCACATTGTTTCGACTGGCAATAGTCCACATGATCACAAAGACAGTGGTTTGGGTAGCAAATAGGGATCTTCCTGTTTCCAACTCTGATAAATTTGTGTTTGATGAGAAGGGAAATCTCTATTTGCTTAAAGGATCAACAGTGGTATGGTCTCCAGGTACAGAAGGCAAGAGGGTTTATTCAATGGAATTGAAAGACACTGGAAACTTGGTTTTGCTAGGGAATGATAGTAGCGTGATTTGGCAGAGTTTCAGCCACCCAACAGATACCTTGTTGCCAATGCAGAACTTCATTGAGGGAATGAAGCTTATCAGTGAACCTGGTCCTAACAACTTGACCTATGTTCTTCAGATTGAATCTGGCAATGCCATTCTCTCCACTGGTTTACAAAATCCACAGCCATATTGGTCTATGAAGGAGGATAGCCGCAAAAAAATCATCCACAAAAGTGGTGATGTGGTGGCTTCAGCTACCCTTAATGCAAGCTCCTGGAGCTTTTATGATGAAACTAAATCCTTGTTGTGGCAATTTGATTTTGCCGAAGAATCAGATTCAAATGGAACTTGGAGTTTAGTTTTGGGGAGTGACGGCATCATCACATTCTCTATTCTCCAAACTGGACTTGCCTCACCAAGAAGAATACCACAAGATTCTTGCAGCACCCCAGAACCTTGTGATCCCTATTACATATGCAGTGGTGAAAAGAAATGCACCTGCCCTTCTGTTCTTAGCTCTAGTCCTAATTGCAAACCCGGGTTTGTCTCTCCTTGTAGCTCAAAAGGCACCGTAGAGCTCCTCAAAGCTGACGATCGACTCAATTACTTTGCACTTGGCTTTGTACCACCCTCTACAAAGACTGATTTAATTGGGTGCAAAACCTCTTGCAGTTCAAATTGCTCATGCCTTGCCATGTTCTTCAACAGTAGTTCAGGGAATTGTTTCCTATTGGACTGGATTGGAAGCTTTCAGAAATCTGTCGAAGATTCTGGTTTAGTGTCCTACATTAAGGTAGTATCTAGTGATGGAGACACTGGACACAGTGGAAGCAGCACTGTGCAGGCAATAGTTGTTGTGATTATTGTGATAGCAACTTTGGTTATCATTTCTATTATGCTGTTTGTGGCACATAGATGTTTCAGGAAAAAGGAAGATTTGCCTCAGTCTCCTGAAGAGAATTCAGAAGATGACGATTTCTTGGAGGGTTTAACCGGCATGCCAATCCGTTACAGCTACAATGATCTAGAAACTGCAACAAGTAACTTCTCAGTGAAGCTAGGAGAAGGGGGTTTTGGATCAGTTTATAAAGGAGTTGTACCAGATGGTACTCAACTAGCAGTGAAGAAGTTGGAAGGAATTGGCCAAGGGAAGAAAGAGTTCAGGGTTGAAGTTAGCATTATAGGGAGCATTCATCACCACCATTTAGTAAGACTCAAAGGGTTCTGTGCTGAAGGGTGTCATAGACTTCTTGCTTATGAGTACATGGCCAATGGATCATTAGATAAATGGATATTCAACAATCTGAGAGATGAATTTGTGTTGGATTGGGATACAAGGTATAACATAGCACTTGGAACAGCAAAAGGACTTGCTTACCTCCATGAAGATTGTGACTCAAAGATTATCCATTGTGACATCAAACCAGAAAATGTGCTTCTAGATGATAACTTCCTGGTCAAGGTTTCTGATTTTGGCTTAGCTAAGCTCATGACACGGGAACAAAGCCATGTTTTCACAACACTTAGAGGCACAAGAGGGTATCTTGCACCTGAATGGATCACAAACTGTCCCATATCAGAGAAAAGTGACGTTTATAGCTATGGCATGGTGTTACTAGAGATCATTGGAGGGAGGAAAAACTATGATCAAAGGGAAACTTTTGAGAAATCCCATTTCCCATCTTTTGCTTTTAAGATGATGGAAGAAGGGAGGGTAAGAGAGATTATTGACTCAAAGCTGGAAACTAATGAAAATGATGAGAGGGTTGAAACTGCTGTGAAAGTTGCATTATGGTGCATACAAGAAGACATGTCTTTGAGGCCTTCTATGAGCAAAGTTGTCCAAATGCTAGAGGGTCTATGCACTGTTTCTAAGCCACCAAGTTGTTCTGTCCCTGGTACTCAGTTTTACTCAAACAGTGATGCCGGCACTTCTTCAGGACCATCAGATTGTAACAGTGATGCCAATATTTCTGCTGTTAGGCTTTCAGGGCCAAGATAA 2430 0.4165 MGKQWSLFSVMDTLLLCVLLSSEVVLTSILRVGKTDPPIEGSQMNWIDKNGILLVSYKGEFGFGFVTTSKDTTLFRLAIVHMITKTVVWVANRDLPVSNSDKFVFDEKGNLYLLKGSTVVWSPGTEGKRVYSMELKDTGNLVLLGNDSSVIWQSFSHPTDTLLPMQNFIEGMKLISEPGPNNLTYVLQIESGNAILSTGLQNPQPYWSMKEDSRKKIIHKSGDVVASATLNASSWSFYDETKSLLWQFDFAEESDSNGTWSLVLGSDGIITFSILQTGLASPRRIPQDSCSTPEPCDPYYICSGEKKCTCPSVLSSSPNCKPGFVSPCSSKGTVELLKADDRLNYFALGFVPPSTKTDLIGCKTSCSSNCSCLAMFFNSSSGNCFLLDWIGSFQKSVEDSGLVSYIKVVSSDGDTGHSGSSTVQAIVVVIIVIATLVIISIMLFVAHRCFRKKEDLPQSPEENSEDDDFLEGLTGMPIRYSYNDLETATSNFSVKLGEGGFGSVYKGVVPDGTQLAVKKLEGIGQGKKEFRVEVSIIGSIHHHHLVRLKGFCAEGCHRLLAYEYMANGSLDKWIFNNLRDEFVLDWDTRYNIALGTAKGLAYLHEDCDSKIIHCDIKPENVLLDDNFLVKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNCPISEKSDVYSYGMVLLEIIGGRKNYDQRETFEKSHFPSFAFKMMEEGRVREIIDSKLETNENDERVETAVKVALWCIQEDMSLRPSMSKVVQMLEGLCTVSKPPSCSVPGTQFYSNSDAGTSSGPSDCNSDANISAVRLSGPR* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1571 809 CDD B_lectin 47 158 IPR001480 -
Vra6g1571 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Vra6g1571 809 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1571 809 SUPERFAMILY Protein kinase-like (PK-like) 474 761 IPR011009 -
Vra6g1571 809 Gene3D Transferase(Phosphotransferase) domain 1 565 770 - -
Vra6g1571 809 PIRSF SRK 8 807 IPR024171 GO:0004674
Vra6g1571 809 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 1 809 - -
Vra6g1571 809 ProSitePatterns Protein kinases ATP-binding region signature. 496 519 IPR017441 GO:0005524
Vra6g1571 809 Pfam D-mannose binding lectin 86 168 IPR001480 -
Vra6g1571 809 MobiDBLite consensus disorder prediction 782 802 - -
Vra6g1571 809 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 809 - -
Vra6g1571 809 SMART blect_4 45 158 IPR001480 -
Vra6g1571 809 Gene3D - 46 157 IPR036426 -
Vra6g1571 809 ProSiteProfiles Bulb-type lectin domain profile. 38 156 IPR001480 -
Vra6g1571 809 Pfam Protein kinase domain 493 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1571 809 CDD STKc_IRAK 496 763 - -
Vra6g1571 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 209 IPR036426 -
Vra6g1571 809 MobiDBLite consensus disorder prediction 782 809 - -
Vra6g1571 809 Gene3D Phosphorylase Kinase; domain 1 459 564 - -
Vra6g1571 809 SMART serkin_6 490 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1571 Vra-Chr6 31065206 31068429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1571 469 770 Receptor kinase-like Gene Family AT5G20050 48.265 3.39e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra6g1571 Pkinase 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1571 - - gmx:100787500 1366.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1571 6 31065206 31068429 Vra6g1571 6 31065206 31068429 ECH
Vra5g1209 5 18487514 18490821 Vra6g1571 6 31065206 31068429 ECH
Vra6g1571 6 31065206 31068429 Vra5g1209 5 18487514 18490821 PCT