Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1568 ATGGAGGAGGGAAGTTCCGATGGCAATTGCGACCGCGATCGAATCCGCAACATCTGCATCCTCGCCCACGTCGACCATGGCAAGACCACCCTCGCCGACCACCTAATTGCGGCGGCGGGCGGCGGCGTCGTTCACCCGAAGCTCGCCGGGCGCGTCCGCTTCATGGACTACCTCGACGAGGAGCAGCGGCGCGCCATCACCATGAAGAGCTCCTCCATCCTCCTACGCTACCACGGCCACGCGGTGAACCTCATCGACTCCCCTGGTCACATCGACTTCTGCAGCGAGGTCTCCACGGCGGCCCGCCTCAGCGACGGTGCGCTCCTCCTGGTCGACGCCGTGGAGGGCGTCCACATCCAGACACACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCTTGCCTCGTTCTCAACAAGCTCGATCGCTTGATCACCGAACTCAAACTCACTCCCTCCGAAGCTTACACGCGCCTATTGCGAATCGTGCACGAGGTCAACGGAATAGTCAGCGCTTACAAATCAGAAAAATACCTCTCCGACGTCGATTCTCTACTCGCCGGCACCGGAACCACCGGCAGCACTGGTGAGACTCTGGAGGATTACGACGATAACGAGGACGTTTTTCAGCCGCAGAAGGGGAATGTTATATTCGCTTGCGCCTTAGACGGTTGGGGATTTGGGATTCGTGAGTTTGCGGAGATATACGCGTCCAAGCTTGGTGCAAGTGTGAATGCGTTGTTGAGAGCATTGTGGGGACCTAGGTATTTTAACCCTAAAACGAAGATGATTGTGGGGAAGAAAGGTGCTGGTGCTAATAAAAAACCTATGTTTGTTCAGTTTGTGTTGGAACCCTTGTGGCAGGTTTATCAGGGGGCGTTGGAAGGGGACAAGGGGCTGGTGGAGAAGGTTATTAGATCGTTTAGTTTGTCGGTGCCACCGCGCGAGCTGCAGAATAAGGATGTGAAGGTCGTGCTGCAGGCTGTTATGAGCCGGTGGCTTCCGCTGTCGGACGCGGTTTTGTCGATGGTGGTTAGGTGTCTGCCGGACCCGGTTGCGGCACAGGCGTTTCGGATATCGAGGTTGATTCCGAAAAGGGAGGTCGTTGGGGATGTAGTGGAGGAGCGCGTGGTGGAGGAGGCGGAGATGATGAGGAAGGCAGTGGAAGGGTGTGACTGTGGGGATGAGGTTCCTTGTGTGGCTTTCGTGTCGAAGATGTTTGCTTTGCCGGTTAAGATGGTGCCCGGACAGAGGGGGGAGGTTGGCAATGGCTATGGTGACGAAGGGGAGGGTGATTCCGATGAGTGTTTTCTGGCTTTTGCTAGGATTTTTAGTGGGGTTTTATATGCGGGGCAGAGAGTTTTTGTGCTTTCTTCGTTGTATGATCCGTTGAAAGGAGAATCGATGCAGAAGCATATACAGGAGGCTGAGTTGAAATCGTTGTATTTGATGATGGGCCAAGGGTTGAAAGTTGTGACATCTGCCAAGGCAGGAAATATTGTTGCCATTGGAGGTCTTGGGCAGCATATATTGAAGAGTGCTACTCTTTCTTCCACTAGGAATTGTTGGCCTTTTTCGAGTATGGCATTCCAAGTTGCCCCGACTTTGAGAGTAGCGATTGAGCCGTCCGACCCTGCTGATGTGGGTGCGTTGCTCAGGGGCTTGAGGCTTCTCAATCGAGCAGATCCGTTTGTTGAGGTCACAGTGTCTTCTAGGGGAGAGCATGTTCTTGCTGCTGCTGGAGAAGTTCATCTTGAGAGGTGCGTAAAGGATTTGAAGGATAGGTTTGCCAAGGTAAGCTTGGAGGTTTCTCCGCCTCTTGTGTCCTACAAAGAAACCATCGAGGGAGAGGTATTGAACGTGATGGAAAATTTGAAAGTTCTTAGCAGGAGATCAGATTATGTTGAAAAAACAACACCCAATGGAAGATGTGTTGTTCGGGTGCAGGTGATGAAACTTCTACCTTCTCTGACAAAGGTGCTCGATGAAAGCTCAGATTTACTTGCAGATATCATTGGAGTAAACTCGGGGCATACATTAAAAAGTTTGGAAACCCAGAGACCAAGTATTCTTGAAAATGAAAACCCAGTTGAAGTGCTCAAGAAACGCATATTGGATGCAGTGGAGGGTGATATTTTGAGCAGGAATGAAGATGACAAGGACCATGCAGAGAAATGTAAATTGAAGTGGCTAAAGGTTTTGAGGAGGATATGGGCACTTGGACCAAGGCAGATTGGTCCTAACCTACTATTCACTCCTGATAGCAAAGCAGAGAGTACCAATAACTCTGTCTTAATACGTGGTTGTTCTCATGTATCAGAGAGGTTGGGTTTTGTGGCCGATTCTAGTACCAGTGACTCTGTTGCCGAGAGGCCTTCAACTGCAAACCAAGCTCTGTACATGGACGCTGAACATCTTGAGAGTAGTGTAATATCTGGGTTCCAGCTGGCCACTTCAGCCGGACCCTTGTGCGAGGAACCTATGTGGGGTTTGGCATTTGTTGTTGAGGCTCGCATATCTCCATTTTCAGGGCATGGTGATGAATCTGAAACGCCCCAGCAATCTGAGCAGTATGGCATCTTTGCAGGGCAGGTAATAGCAACTGTCAAAGATGCATGTAGAGCAGCTGTGCTTCAGAATAAGCCACGACTTGTAGAAGCAATGTACTTCTGTGAATTGAATACACCTACTGAATATTTGGGTCCTATGTATGCTGTACTTTCCCGGAGAAGGGCCCGAATTTTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACTGTCCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTTTCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAACACCGCAAGAAAGTTAATTGATGCCGTCAGACGTCGCAAGGGCCTTCCTGTGGAGGAAAAGGTTGTGCAGCATGGAACCAAGCAGAGGACACTGGCTCGTAAAGTCTGA 3081 0.5063 MEEGSSDGNCDRDRIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKLAGRVRFMDYLDEEQRRAITMKSSSILLRYHGHAVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSEKYLSDVDSLLAGTGTTGSTGETLEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVNALLRALWGPRYFNPKTKMIVGKKGAGANKKPMFVQFVLEPLWQVYQGALEGDKGLVEKVIRSFSLSVPPRELQNKDVKVVLQAVMSRWLPLSDAVLSMVVRCLPDPVAAQAFRISRLIPKREVVGDVVEERVVEEAEMMRKAVEGCDCGDEVPCVAFVSKMFALPVKMVPGQRGEVGNGYGDEGEGDSDECFLAFARIFSGVLYAGQRVFVLSSLYDPLKGESMQKHIQEAELKSLYLMMGQGLKVVTSAKAGNIVAIGGLGQHILKSATLSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLRGLRLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCVKDLKDRFAKVSLEVSPPLVSYKETIEGEVLNVMENLKVLSRRSDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESSDLLADIIGVNSGHTLKSLETQRPSILENENPVEVLKKRILDAVEGDILSRNEDDKDHAEKCKLKWLKVLRRIWALGPRQIGPNLLFTPDSKAESTNNSVLIRGCSHVSERLGFVADSSTSDSVAERPSTANQALYMDAEHLESSVISGFQLATSAGPLCEEPMWGLAFVVEARISPFSGHGDESETPQQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALSEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTLARKV* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1568 1026 CDD EF2_II 399 520 - -
Vra6g1568 1026 SUPERFAMILY EF-G C-terminal domain-like 887 985 IPR035647 -
Vra6g1568 1026 PRINTS GTP-binding elongation factor signature 17 30 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 PRINTS GTP-binding elongation factor signature 63 71 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 PRINTS GTP-binding elongation factor signature 83 93 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 PRINTS GTP-binding elongation factor signature 99 110 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 PRINTS GTP-binding elongation factor signature 135 144 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 SUPERFAMILY Translation proteins 390 529 IPR009000 -
Vra6g1568 1026 SUPERFAMILY EF-G C-terminal domain-like 533 607 IPR035647 -
Vra6g1568 1026 Gene3D Translation factors 352 532 - -
Vra6g1568 1026 CDD eEF2_snRNP_like_C 887 965 - -
Vra6g1568 1026 Gene3D - 883 1017 - -
Vra6g1568 1026 PANTHER - 10 1025 - -
Vra6g1568 1026 SMART EFG_C_a 884 973 IPR000640 -
Vra6g1568 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 350 IPR027417 -
Vra6g1568 1026 Pfam Elongation factor Tu GTP binding domain 14 340 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 Pfam Elongation factor Tu domain 2 439 517 IPR004161 GO:0005525
Vra6g1568 1026 CDD aeEF2_snRNP_like_IV 606 891 - -
Vra6g1568 1026 Gene3D Elongation Factor G (Translational Gtpase), domain 3 533 610 - -
Vra6g1568 1026 Gene3D - 8 211 IPR027417 -
Vra6g1568 1026 CDD EF2 16 238 - -
Vra6g1568 1026 Gene3D - 630 881 IPR014721 -
Vra6g1568 1026 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 13 245 IPR000795 GO:0003924|GO:0005525
Vra6g1568 1026 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 1025 - -
Vra6g1568 1026 Gene3D Yeast translation eEF2 (G' domain) 230 335 - -
Vra6g1568 1026 Pfam Elongation factor G C-terminus 885 969 IPR000640 -
Vra6g1568 1026 SUPERFAMILY Ribosomal protein S5 domain 2-like 609 886 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1568 Vra-Chr6 30982023 30989569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1568 14 1026 Eukaryotic Initiation Factors Gene Family AT3G22980 70.996 0.0 1471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1568 K14536 - pvu:PHAVU_003G003900g 1905.57