Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1566 ATGGTCCAAGCAAAGAAGAAGTTCAGAGGAGTGAGGCAACGCCAATGGGGCTCATGGGTCTCAGAAATTCGTCACCCTTTGCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCAGCAATTTTGATGAATGGTCGAAATGCCAAGACAAATTTCCCTACACCAGGAGAATTCAATGAGGCTGAAGGTGGCAGCAGTTTTTCATCTCCGAATGTTCTAGCTGAGGTTCTGAGTACAAAGCTCAAGAGGTGCTGCAGAGACCCTTCTCCATCCCTCACATGTCTCAGACTCGATGCTGACAATTCCCACATTGGAGTCTGGCAAAAGGGTGCAGGACCACACTCACATTCGAATTGGATTGTCAGGGTAGAGCTTGGAAACAAACGTCCAGAGACTCAGTCAATTCTGTCAGAAGCATCTACACAAAATGATGGTCAAGAAGACGAAGAACATAGAATTGCGATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCATGTGCTGCTTCAACTAATTAA 555 0.4613 MVQAKKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPTPGEFNEAEGGSSFSSPNVLAEVLSTKLKRCCRDPSPSLTCLRLDADNSHIGVWQKGAGPHSHSNWIVRVELGNKRPETQSILSEASTQNDGQEDEEHRIAMQMIDELLNWNYPCAASTN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1566 184 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vra6g1566 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 181 - -
Vra6g1566 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vra6g1566 184 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vra6g1566 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vra6g1566 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 181 - -
Vra6g1566 184 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vra6g1566 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vra6g1566 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vra6g1566 184 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1566 Vra-Chr6 30959838 30960782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1566 6 182 AP2-EREBP Transcription Factor Family AT5G25390 60.656 2.36e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g1566 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1566 - - var:108320982 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1566 6 30959838 30960782 Vra6g1566 6 30959838 30960782 ECH
Vra5g1202 5 18424088 18425192 Vra6g1566 6 30959838 30960782 ECH
Vra7g2254 7 42494403 42495656 Vra6g1566 6 30959838 30960782 ECH