Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1559 ATGGCTTCTAGGAAAATCAAATCTGAACCTTCGACAATCGAGGCCGCCAAGGCCTACGACCATGCTGCCTTCAGGCTCTACAGCTCAAAGGTCATCCTCAACTTCCCGCTCAAAGCAGGCGCGATGGACGCCACCGCCGATGCCGAAGGCGAAAGGAAGCGGCGGTGCGAGGAGGAGGAGGTAGAGGAAGTGAAGTTGATGGTGAAGAAGGAGAAAACGACAGAACAGAAGGTGAACCCTAATTTGGGTTTAATAGGTTTAGATGTCCCTATTTCTGCGGGTTTGTTCCAATTGGGTCCTCGTATTCTGGAAGTGCTCAATTAG 324 0.5123 MASRKIKSEPSTIEAAKAYDHAAFRLYSSKVILNFPLKAGAMDATADAEGERKRRCEEEEVEEVKLMVKKEKTTEQKVNPNLGLIGLDVPISAGLFQLGPRILEVLN* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1559 107 Gene3D AP2/ERF domain 10 38 IPR036955 GO:0003700|GO:0006355
Vra6g1559 107 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 12 78 - -
Vra6g1559 107 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1559 Vra-Chr6 30888003 30889128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1559 11 83 AP2-EREBP Transcription Factor Family AT5G47230 52.055 3.18e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1559 K09286 - vra:106763696 172.555