Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1555 ATGGCGAAGAAAAAGAATTCTCTGGTGTTTATGGATGTGTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTATGTACAGGAGAAATGGGAGTTGGTCCACACACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCGGATTTTGAAAGGCTCCATTGCCCGAGGTGGTGATTTTGTCAATCGAAATGGGACCAGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCGCCTAGGCTAAAGCATGATGCTCCAGGCCTTCTTTCAATGCCAGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATAATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGTCATGATATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAACGAGGATGAAAAGAAGATAAATAAATCAAAAAAGGGAAGAGATGGATCTTCTGAAACAAATAGTCATTTACTGCATAAGGGAAAGCACCGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGAATCTGATAGTTCCTCAGATTCAGAAACAACATCTTCTGAAAGTGACAGTGATTCTGATTCTGATATGTCTTCATCATCTTACACAAGTTCCTCCAGTGATGATAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACGTAAACGTGGAAAAAAAAGAGATAAGCACCGAGAAAAGAGACGGAGGAAACGAGATAAAAGATCAAAGCGTAGATCAAAGAGGGAATCGCCCAGTCATACTGATTCAGATAGTGAAAGTAAGAGCAACAAATGCTCTGATATTGAAAGTTATGGTGCCAAAGTGAATGATCAGAATCATGAAGACCATTCTCAGAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGAGAAAGAATTACCTCCAATGCACCCTAAAAAGAGGGAGAAACTGGATATATTGAAAGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGCCAACTATAGATCTGAAAGAAGTGAAGTGAGGCAGCCTGATGTGATGGATGATCAACCAGACAAATCTAGGAGTCAAAGCACGAGTGTAAGTCCTAGGAGGCGCAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGGTTGGACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATTCTCCATTACGGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGCACAAGGAGGAGTCCAAACAGAAGAAGCGTCAGTAGAAGCCCAATGAGAGGTAGGAAAGGTAGAAGTATCAGTAGAAGCTCTGTAAGACATCATGGGCATCAAAGTGTCAGCACAAGCCCTCTAAGACCCCTTTCTCGGAGCTACCAGAGGACTTCACCAAAAACATCATCCCGAAGATCAATCAGCAGAAGCCCTAAGACATCTCATGGTCGAAGAAGTGTCAGTGCAAGCCCAGCAAGATCCCCTTCTCGGAGCCAAAGGAGTTCACCCATAGCACCATCACGTCGATCAATCAGCAGAAGCCCAGTAAGAAATCACCGACCTAGAAGTGTCAGTAGAAGCCCTTTACGATCTCAAGGTCATAGAAGTGATAGTGGAAGCCCTGTAAGATCCCTCACACCGAGTCATCGCATATCACCCAGAACAAAATCTAGAAGATCAATCAGCAGAAGTCCTGTGAGAACTCGCAACTATAAAAGTATCAACAAAGGCACCTTGAGATCTCGTGGTCGTAGAACAAGCAGTGGAAGCCCTGTAAGATCCCTTTCTCGAAGTGGCCGTAGGAGTTCACCAAGAGCACCTTCACCAAGATCAATCAGTAGAAGCCCTGTGAAAACTGGCAATCATAGAAGTGTAAGTAGAAGCCCCTTGCGATCTCATGGTCACAGGACTGTGAGTGCTAGCCCCGTTAGATCACCTTCATGGGAGCGTCAAAGGAGTTCACCTAGAGCACCATCACGAAGATTGGTCAGTAGAAGCCCGGTAAGAGTGTCAAGAAAGAGTTTAAGCAGGAGTCCAGTTCGATCATCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTGAGAAGCAATAGTCGGAGTCCAGTTAGAGGGCCAAGCAGAGTCCATCGCCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGTTTGTCTAGAAGTTTGTCACCTGATGTTTCCCCAAAACGTATCAGAAGGGGAAGAGGTTTTAGCGAACGATATTCTTATGCTAGAAGGTATAGGACTCCTTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAGTGAACGTGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTAACAGGAGCCCACCACCTCGCAGAAGAACCCCACCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTTTCTCGCAGTCCACGGTACAGGGGTCGACGATACAGTCGAAGCCGGAGCCCTGTCCGCAGTCGTTCACCTGTGGGAACATATCGACGTCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGTAGCAGGTCTTTGTCCCGGAGCAAGAGTCCATCACTATCCAGGGCTTCAGTGGAGTCACAATCTCCACGAAAGAACAGCAGGTCAAGGTCCCAGTCCCAAAGCTCAGATGGAAAGAAAGGCCTTGTATCTTACGGGGACGGTTCTCCAGATTCAAGCTGA 2826 0.4565 MAKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGEMGVGPHTGKSLHYKGSFFHRILKGSIARGGDFVNRNGTSGESIYGSKFPDESPRLKHDAPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHLLHKGKHRKSSGDKRKRRKYYSSESDSSSDSETTSSESDSDSDSDMSSSSYTSSSSDDRRRKRKRSRKDKRKRGKKRDKHREKRRRKRDKRSKRRSKRESPSHTDSDSESKSNKCSDIESYGAKVNDQNHEDHSQRHAEGQSSSVVEKELPPMHPKKREKLDILKEEEFPKENGERRSNGTGANYRSERSEVRQPDVMDDQPDKSRSQSTSVSPRRRKSKSPSISPKRRLDRSPSGSRSPHSPLRRSLSQSPVRSTRRSPNRRSVSRSPMRGRKGRSISRSSVRHHGHQSVSTSPLRPLSRSYQRTSPKTSSRRSISRSPKTSHGRRSVSASPARSPSRSQRSSPIAPSRRSISRSPVRNHRPRSVSRSPLRSQGHRSDSGSPVRSLTPSHRISPRTKSRRSISRSPVRTRNYKSINKGTLRSRGRRTSSGSPVRSLSRSGRRSSPRAPSPRSISRSPVKTGNHRSVSRSPLRSHGHRTVSASPVRSPSWERQRSSPRAPSRRLVSRSPVRVSRKSLSRSPVRSSARSLSRSSGRVPLRSNSRSPVRGPSRVHRRSYSRSPRGRSLSRSLSPDVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSERDRYSGYRRYSPRRNRSPPPRRRTPPRFRSRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRRRVERSRSLSRSSRSLSRSKSPSLSRASVESQSPRKNSRSRSQSQSSDGKKGLVSYGDGSPDSS* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1555 941 Gene3D - 1 183 IPR029000 -
Vra6g1555 941 MobiDBLite consensus disorder prediction 348 373 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 322 336 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 889 928 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 825 849 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 606 700 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 177 941 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 709 745 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 177 199 - -
Vra6g1555 941 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 MobiDBLite consensus disorder prediction 465 481 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 402 417 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 565 591 - -
Vra6g1555 941 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 MobiDBLite consensus disorder prediction 200 214 - -
Vra6g1555 941 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
Vra6g1555 941 MobiDBLite consensus disorder prediction 224 252 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 434 464 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 482 552 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 387 401 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 805 820 - -
Vra6g1555 941 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vra6g1555 941 MobiDBLite consensus disorder prediction 258 295 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 874 888 - -
Vra6g1555 941 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 1 377 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 296 312 - -
Vra6g1555 941 MobiDBLite consensus disorder prediction 772 792 - -
Vra6g1555 941 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1555 Vra-Chr6 30752346 30759467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1555 25 170 U-box Gene Family AT5G67530 37.838 2.84e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1555 K09566 - gmx:100801588 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1555 6 30752346 30759467 Vra6g1555 6 30752346 30759467 ECH