Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1551 ATGACATCAAGCCGAAGAAAGAAGACCAAAAAGTTGTTTGGAATATGTGGTCATGGTGATGAAAATGAAGAAGATAATGTAAACGAGAGAGAAATCGAGGCAAGGGAAGATGGTAGCCAATACAGTCTCACAGGTGTTTTTCTTCCTTCTCTGGGTGCCACTGCCTTGACTAACGGTAGTCGGAGACAACAGCTTCGTCGTCATGTCATCTTTCCATACAATCATAATTACAGGCTATGGAACAAGTTTCTGCTAATATTGGTCTTCTACACGGCTTGGATATGTCCATTTGAATTTGGTTTCCTTGAAAAATCAAAGGGTGCCTTAGCTGTAATCGACAACCTTGTAAATGGGTTTTTTGCCATTGACGTTGTACTCACCTTTTTCGTTGCTTACCTTGACAAGTCTACTTATCTATTAGTTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCTTGGTTGATTTTGGATGTCATTGCTTGCATTCCATATGAAGTTGTTCGCAGTATGTTGCCACCTAGTCTTCAGTCCTATAGTTACTTAAGTGTTCTCCGACTTTGGCGTCTCCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGATCGAAATTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTATTCTCAGTGCATGCTGCAGCATGTTTTTTCTATTTTCTTGCTGGGAGAGATGCTCCAAAAGATACATGGCTTTCACTTGTTCCTACAACCACCAACCAAGATATATGGGGAAAGTACGTAGTAGCTGTATATTGGTCCATAGTCACCCTTGCATCAGTTGGCTATGGTGATCTACATCCAGTAAATACAAAAGAAATGATATTTTGCATTTTTTATATGTTCTTCAACCTTGGACTCACATCATACTTGATAGGCAACATGACCAACATGGTTGTCCATTGGACTGAAAGAACTAAAAGATATAGAGACACTGTCCAATATGCCTCAAATTTTGCTCATAGGAATCAATTGCCTACTCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAGGTATAGAGCTGATATAGAAGGTGTACAACAACAAGAGATTATTGATTCCCTTCCAAAAGCCATTCAGTCAAGCATCGCACAATACTTATTCTTTTCACTTATTGACAAAGTGTACTTATTTCATGGAGTCTCAAATGACCTACTTTTTCAAATGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCAAAAGAAGATGTGATTTTGCAAAATGAAGCACCAACAGAATTTTATATATTCGTTACAGGAGCTGCTGATCTTATCATTCAAAATAATGGATTAGAACAGATTGTTGGAGAAGTAAGACAAGGAGATGTGGTTGGTGAAATAGGAGTCTTGTGTTATAGGCCACAATTGTTCACAGTCCGAACCAAGCGATTGAGCCAAATCTTACGTTTGAATCGAACCACATTTATAAATCTTACTCGTTCACATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCAACATTTACATGAAATTGGGAGTCCAATTATGGAAGAAATTTTGGCAGAAGCAGAAGTAATGTTGGCTAGGGGAAAAATGGATTTGCCAATTAGTTTATTGTTTGCAGCTAGTAGAGGTGATGATATCATGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAATGAACCGGACAAGAATGGAAAGACAGCATTGCATATTGCAGCTTGTAAAGGAAACGACCACTGTGTACTTGTGCTTGTGGAACATGGAGCAAATCCCAACATCAAAGACCTAGAAGGAAATTCGCCACTGTGGGAAGCAATTAAGGGTGGACATGAAAGTGTGATGAAAATTCTCTTAGAAAATGGTGCAGAAATAACATCTGATGATGTAGTTGAATTTGCACGATTGGGTATTGAGACAAACAACCTAGAAATAGTGAAGGAAATAATTGAACGTAAAGGGGAAGTGAGAGAATCTGATAGTAAATTGACGACACTGCTCCATGCTGCAGTGTGTGAGGGAAATACTGAAATAGTGAAGTACCTTATAGAACTAGGAGCAGACATTGATAGACAAGATGATGTTGGGTTGACTGCAAGATCTTTAGCAGAACATCAATGTCATGAGGAAATACTAAACATTTTTAAGAAAATTGGACACAACAATAAACCAAATGCTCTTCCTCCTATTTCATCCATTGCTGCTAGGTGTCAAAGTGAACCCACAATACCAGTCATTCTTCAACCCAACAAACCACCTAATAAAGAACTCACCTGGTTTGATAAACATCAAAGAAGAAGAGTCAGTCCTTTCCACAATTCCTTTTTTGGAATCATGTCATCTGCAAATTATGCAACAAAAGAGTCACCAAAATCATCTCAAATGAGTCAAACTATTAAAGAGGAAGTAACAATGAGAATAACACTTAGTTGTCCAGAGAAAGGTGAAGGTGCCAAGAAGCTTCTGTTTTTGCCAGATTCTATTGAAGAAATACTACGAATTGGTGCTAAAAAATTTGGTTGTTCTCCGACCAAAATATTGACCACAGAAGGAGCTCAAATTGATGACATAGATGTTATAAGAGATGGTGATCATCTTGTTCTTGCATAG 2628 0.3798 MTSSRRKKTKKLFGICGHGDENEEDNVNEREIEAREDGSQYSLTGVFLPSLGATALTNGSRRQQLRRHVIFPYNHNYRLWNKFLLILVFYTAWICPFEFGFLEKSKGALAVIDNLVNGFFAIDVVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIACIPYEVVRSMLPPSLQSYSYLSVLRLWRLHRVSAMFARLEKDRNYSYFWVRCCKLTCVTLFSVHAAACFFYFLAGRDAPKDTWLSLVPTTTNQDIWGKYVVAVYWSIVTLASVGYGDLHPVNTKEMIFCIFYMFFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQYASNFAHRNQLPTRLQEQIFAHLLMRYRADIEGVQQQEIIDSLPKAIQSSIAQYLFFSLIDKVYLFHGVSNDLLFQMVTEMKAEYFPPKEDVILQNEAPTEFYIFVTGAADLIIQNNGLEQIVGEVRQGDVVGEIGVLCYRPQLFTVRTKRLSQILRLNRTTFINLTRSHVGDGTMIINNFLQHLHEIGSPIMEEILAEAEVMLARGKMDLPISLLFAASRGDDIMLNQLLKKGSDPNEPDKNGKTALHIAACKGNDHCVLVLVEHGANPNIKDLEGNSPLWEAIKGGHESVMKILLENGAEITSDDVVEFARLGIETNNLEIVKEIIERKGEVRESDSKLTTLLHAAVCEGNTEIVKYLIELGADIDRQDDVGLTARSLAEHQCHEEILNIFKKIGHNNKPNALPPISSIAARCQSEPTIPVILQPNKPPNKELTWFDKHQRRRVSPFHNSFFGIMSSANYATKESPKSSQMSQTIKEEVTMRITLSCPEKGEGAKKLLFLPDSIEEILRIGAKKFGCSPTKILTTEGAQIDDIDVIRDGDHLVLA* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1551 875 SMART cnmp_10 393 510 IPR000595 -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat region circular profile. 604 635 - -
Vra6g1551 875 SUPERFAMILY cAMP-binding domain-like 318 513 IPR018490 -
Vra6g1551 875 Pfam Ion transport protein 78 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra6g1551 875 SUPERFAMILY Ankyrin repeat 542 726 IPR036770 -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Vra6g1551 875 CDD CAP_ED 393 498 IPR000595 -
Vra6g1551 875 Pfam KHA, dimerisation domain of potassium ion channel 812 874 IPR021789 -
Vra6g1551 875 ProSiteProfiles KHA domain profile. 812 875 IPR021789 -
Vra6g1551 875 Gene3D - 540 723 IPR036770 -
Vra6g1551 875 PANTHER POTASSIUM CHANNEL AKT1 15 875 IPR045319 GO:0005249|GO:0006813
Vra6g1551 875 Gene3D - 80 314 - -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Vra6g1551 875 SUPERFAMILY Voltage-gated potassium channels 72 314 - -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Vra6g1551 875 Pfam Ankyrin repeats (3 copies) 543 634 IPR002110 GO:0005515
Vra6g1551 875 Pfam Ankyrin repeats (3 copies) 645 699 IPR002110 GO:0005515
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 90 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g1551 875 SMART ANK_2a 571 600 IPR002110 GO:0005515
Vra6g1551 875 SMART ANK_2a 604 633 IPR002110 GO:0005515
Vra6g1551 875 SMART ANK_2a 538 567 IPR002110 GO:0005515
Vra6g1551 875 SMART ANK_2a 668 697 IPR002110 GO:0005515
Vra6g1551 875 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Vra6g1551 875 PRINTS Ankyrin repeat signature 684 698 IPR002110 GO:0005515
Vra6g1551 875 Pfam Cyclic nucleotide-binding domain 413 498 IPR000595 -
Vra6g1551 875 Gene3D Jelly Rolls 357 516 IPR014710 -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Vra6g1551 875 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 15 875 - -
Vra6g1551 875 ProSiteProfiles Ankyrin repeat region circular profile. 668 700 - -
Vra6g1551 875 ProSiteProfiles cAMP/cGMP binding motif profile. 393 512 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1551 Vra-Chr6 30667777 30677906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1551 21 875 Ion Channels AT2G25600 54.971 0.0 958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1551 6 30667777 30677906 Vra6g1551 6 30667777 30677906 ECH