Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1550 ATGGAGCCTTTTGAAGGAGTCATTAAGGATTTCAAAGGAAGGGCTGCTTTCTATAAACATGATTGGACCAGTGCATTATGTTCTGGGATTAAGATATTGGCTCCAACTTTCTACATCTTCTTCGCTTCAGCTCTTCCTGTTATTGCTTTTGGGGAACAACTTAACAGGGACACAGGTGGAAGTTTAAGTACAGTTGAAACACTAACATCAACTGCTATTTGTGGAATTATCCACTCAATAGTTGGTGGTCAGCCTATGTTGATTTTGGGAGTTGCTGAACCAACAGTTATAATGTACACTATTCTGTATCAGTTCTGCACAAAAAGTCCAGATCTTGGTGCTGAGATGTTTTTGCCTTGGGCTGGATGGGTTTGTGTGTGGACAGCTCTCTTGCTGATTTTGCTTGCAACTTTCAATGCCTGCACAATTATCTCGAGGTTCACAAGACTCGCAGAGGAATTATTTGGCATGTTAATCACTGTCCTTTTCTTCCAAGAGGCTATAAGGGGAATCAAGGGTGAATTCGATACACCCATATCAGAAAATCCTTCTGCAGAGGAACATCAATTCCAATGGCGGTATATAAACGGACTACTTGCAGTCATTTTCTCTTTTGGAATACTTCTCACTGCCATGCTCAGCAGAAGAGCAAGAACATGGAGATATGGAACAGGGTGGATGCGAGCTATTGTTGCAGATTATGGGATTCCATTGATGGTTATGCTTTGGACTGGACTATCCTATACTGTACCCGACAAAGTTCCTTCTGCTGTTCCTAGAAGGCTGGTTTGTCCACTTCCCTGGGAACCTGCTTCTCTCTATCACTGGACAGTAATAATGGATATGGGAAAGGTACCCGTGCTTTACATCTTTGCAGCATTTATTCCAGCTATGATGGTAGCAGGGTTATACTTCTTTGATCATAGTGTAGCTTCTAAGATGGCTCAACAGAAGGAATACAACCTTCAAAAGCCAAGTGCTTATCACTATGATATGTTCCTTCTTGGTATACTGACTCTGATTTGTGGTTTACTTGGCCTCCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCCATGCATACAAAGAGTTTAGCAGTTCTCAGGAGGCAGATGGTCCGAAAAAAGGTGGTAAAAAGTGCCAAGGATTGCATTAAGCAACAAGGAACCAACATTGAATTATTTGGAAAGATGCAAGATGTGCTTATAGAAATGGATTCTAAACCAAACATTTTGAATTTGGTTCAGACTCAAGACCTGAAGAATTTGAAGGAGGCTGTAATGCAATCTTCTGATAATAATGGAGAAACGCGTACATTTGATCCTGACAAACACATCGATTCCTACATACCTGAACGTGTTAATGAGCAAAGAATTAGTAACTTATTGCAGTCTCTCCTGGTTGGTCTATCAATTTTTGCCATTTCTGTCATCAAAATGATACCTACTTCAGTTCTGTGGGGATATTTTGCATACATGGCTATTGATAGTCTACCAGGGAATCAATTCTGGGAAAGAATATTGCTTCTCTTAATCTCACCAAGCCGGCGCAACAAAATTTTGGAAGGTCCTCATGCCTCTTTTGTGGAATCAGTGCCATTCAAGACCATAGCCATGTTCACAGTCTTCCAGTGTGTGTACTTTTTAATATGTTATGGAGTGCAATTGATACCTATAGGAGGAATACTTTTCCCATTACCTTTCTTCCTTCTCATACCCATAAGAGAGCACTTGCTTCCCCACATATTCGAGCCTATTGATCTTCAAGAACTAGATGCTGCTGAGTATGAGGAAATTCTTGGAGTTCCAAATTCGGTATATATGTCATGTGCTCAACAATGTAGTTATATGTTTATGAAAGATCCAAGTCTGGATGACAACAACGCCGAGATATTGGATCAGATAACAACTTACAGAGGAGAATTAAAGCATAGAACTGTAAGCCAAAGGAGAAACAGAGGCTTCAATGAAGAGGATCAAGAGACAGATATTTATCTATAA 1998 0.4049 MEPFEGVIKDFKGRAAFYKHDWTSALCSGIKILAPTFYIFFASALPVIAFGEQLNRDTGGSLSTVETLTSTAICGIIHSIVGGQPMLILGVAEPTVIMYTILYQFCTKSPDLGAEMFLPWAGWVCVWTALLLILLATFNACTIISRFTRLAEELFGMLITVLFFQEAIRGIKGEFDTPISENPSAEEHQFQWRYINGLLAVIFSFGILLTAMLSRRARTWRYGTGWMRAIVADYGIPLMVMLWTGLSYTVPDKVPSAVPRRLVCPLPWEPASLYHWTVIMDMGKVPVLYIFAAFIPAMMVAGLYFFDHSVASKMAQQKEYNLQKPSAYHYDMFLLGILTLICGLLGLPPSNGVLPQSPMHTKSLAVLRRQMVRKKVVKSAKDCIKQQGTNIELFGKMQDVLIEMDSKPNILNLVQTQDLKNLKEAVMQSSDNNGETRTFDPDKHIDSYIPERVNEQRISNLLQSLLVGLSIFAISVIKMIPTSVLWGYFAYMAIDSLPGNQFWERILLLLISPSRRNKILEGPHASFVESVPFKTIAMFTVFQCVYFLICYGVQLIPIGGILFPLPFFLLIPIREHLLPHIFEPIDLQELDAAEYEEILGVPNSVYMSCAQQCSYMFMKDPSLDDNNAEILDQITTYRGELKHRTVSQRRNRGFNEEDQETDIYL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1550 665 Pfam HCO3- transporter family 452 541 IPR011531 GO:0006820|GO:0016021
Vra6g1550 665 Pfam HCO3- transporter family 194 370 IPR011531 GO:0006820|GO:0016021
Vra6g1550 665 Pfam HCO3- transporter family 3 176 IPR011531 GO:0006820|GO:0016021
Vra6g1550 665 Gene3D Helical hairpin bin 14 56 - -
Vra6g1550 665 PANTHER ANION EXCHANGE PROTEIN 2 659 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vra6g1550 665 PANTHER BORON TRANSPORTER 6-RELATED 2 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1550 Vra-Chr6 30654428 30659410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1550 3 652 Antiporters AT4G32510 63.126 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1550 K24194 - gmx:100808880 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1550 6 30654428 30659410 Vra6g1550 6 30654428 30659410 ECH
Vra5g1176 5 18197372 18203017 Vra6g1550 6 30654428 30659410 ECH
Vra6g1550 6 30654428 30659410 Vra5g1176 5 18197372 18203017 PCT