Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1546 ATGTCTTCGACGATTGTGGCACATTCGAGTTCTTGGAGCAGGGCACTTGTCGCGATCTCGCCCTACACCTTCGCCGCCATCGGTATCGCGGTCGCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATCTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAAGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTAATCTTTTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATCCTTCAAACAAAATTAGAAAGTGTTCCAGCAGCAAATATCTACGACCCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCTGGATTAATCGTGGGCTTTGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATCGGAAGCAGCTGTGCTTTATCTGATGCTCAGAATTCCTCCCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGCGCGCTTGGGCTATTTGGAGTGATTGTTGGAATTATTATGTCAGCACAGGCAACATGGCCAACAAAAGTTTAG 543 0.4678 MSSTIVAHSSSWSRALVAISPYTFAAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPAANIYDPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1546 180 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 5 178 - -
Vra6g1546 180 SUPERFAMILY F1F0 ATP synthase subunit C 20 89 IPR035921 -
Vra6g1546 180 CDD ATP-synt_Vo_c_ATP6F_rpt2 106 170 - -
Vra6g1546 180 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 178 - -
Vra6g1546 180 SUPERFAMILY F1F0 ATP synthase subunit C 103 171 IPR035921 -
Vra6g1546 180 PRINTS Vacuolar ATP synthase 16kDa subunit signature 40 64 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra6g1546 180 PRINTS Vacuolar ATP synthase 16kDa subunit signature 66 90 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra6g1546 180 PRINTS Vacuolar ATP synthase 16kDa subunit signature 122 148 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra6g1546 180 PRINTS Vacuolar ATP synthase 16kDa subunit signature 149 172 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra6g1546 180 Pfam ATP synthase subunit C 111 170 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vra6g1546 180 Pfam ATP synthase subunit C 27 86 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vra6g1546 180 CDD ATP-synt_Vo_c_ATP6F_rpt1 24 86 - -
Vra6g1546 180 Gene3D - 22 177 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1546 Vra-Chr6 30602128 30605046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1546 8 179 Primary Pumps ATPases(2) AT2G25610 91.279 2.58e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1546 K03661 - gmx:100527177 311.227