Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1543 ATGGAGGGCAGTGGCATATCGAGAGTTGACAGTGGAAGAGACAGTGGTTCTAAGATATGGAGGAACAACAGCATGGATGTTTTTTCAACTTCTGAACGTGAAGATGATGAGGAAGCTCTCAAATGGGCAGCAATAGAGAGACTTCCCACGTATCTTCGCATTCAGAGAAGTATTCTCAACAGTGAAGATGGCAAAGGGAGAGAAGTTGACATCAAGCAACTAGGCCTCACAGAGAGGAAGATTATTGTGGAGAGGCTCGTGAAGATAGCAGAAGAGGACAATGAAAGGTTCTTGCTGAAACTCAGGGAGAGAATGGACAGAGCAGGGCTTGATATTCCAACAATAGAAGTTAGATTTGAGCATGTTAATGTGGAAGCACAGGTTTATGTTGGAGGACGATCCTTGCCTTCAATGCTGAACTTCTTCGTTAATGTAATTGAGGGATTCTTACATTGTCTTCACATAATTCCAAGTCCAAAGAAACCGTTACATATACTTCAGAATATCAGTGGAATCATAAAGCCTCGAAGAATGACATTGCTTTTGGGACCACCAGGTTCTGGAAAGACCACATTGCTGTTGGCATTGGCTGGAAAACTTGGTAAAGATTTGAAACATTATGGGAGAGTCACATACAACGGACATGGGCTTGAAGAGTTTGTGCCACAAAGGACATCAGCTTATATAAGTCAACATGATAACCACATTGGAGAAATGACTGTGAGAGAAACACTGGCTTTCTCAGCTAGATGTCAAGGGGTTGGACAGAATTATGAGATGTTGGCTGAGCTACTAAGAAGAGAGAAACAAGCAAAGATTAAACCAGATCCTGATATCGATGCATATATGAAGGCTGCAGCATTAGGAAGACAGAGAACGAGGGTAGTCACTGATTACATTCTTAAGATTTTGGGACTTGAAGTGTGTGCTGACATTATGGTAGGAGATGGAATGATAAGAGGTATCTCAGGAGGGCAGAAAAAGAGAGTCACAACAGGGGAGATGCTGGTTGGACCTGTAAAGGTGTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCCACAACTTTTCAGATAGTCAACTCCATCCAACAATCTATCCATATTCTGAATGGAACTGCACTTGTTGCTCTTCTACAGCCTGCACCAGAAACTTATGAACTATTTGACGATATAATACTGTTAACAGATGGGCAAATTGTGTATCAAGGACCAAGAGAAAATGTACTTGAGTTTTTTGAATCTATGGGTTTCAAGTGTCCAGAAAGAAAAGGAGTAGCTGACTTCCTACAAGAAGTTACATCAAAAAAGGATCAGTGGCAATATTGGGCACGTAAAGATGAACCTCACAGCTTTGTCACTGTCAAGGATTTCGCTGAAGCATTCCAATTATTTCACATAGGTCAAAAACTAGGAGAGGAGCTAGCCACTCCATTTGATAAGTCTAAATGCCATCCAAATGCATTGACCACAAAGAAGTATGGTGTTAACAAGAAGGAGCTGCTGAGGGCTTGTGCTAGCAGAGAGTTTTTGCTTATGAAGAGAAATTCGTTTGTCTACATATTCAAAGTCACACAACTCGTCTATTTAGCTGTCATGACAACAACATTATTTCTACGAACTAAGATGCATCACGAGACCGTGGAGGATGGAGGAACTTACTTGGGTGCTCTTTTTTTCGCAGTCATGGTAGCGATGTTCAATGGAATATCAGAGCTAAATATGGCCATTATGAAACTTCCTGTCTTTTACAAGCAAAGGGACCTTCTTTTCTATCCTGCATGGGCTTATTCTATTCCACCATGGATTCTCAAAATACCTGTAACCCTTATAGAAGTAGCTATTTGGGAAGGAATCACTTACTATGCCATTGGCTTTGATCCAAATTTTTTAAGGCTTTTGAAGCAATACTTGATACTTCTGTGCATTAATATGATGGCATCTTCACTGTTTCGGTTGATGGCCGCATTAGGAAGGGATGTTATAGTTGCAAACACCGTTGGAGGATTTGCATTACTTGTAGTTCTGGTTTTGGGAGGATTTGTGATTTCGAGAGAGGATGTGCACAAATGGTTTGTGTGGGGTTACTGGTCCTCACCTCTGATGTATGGACAGAATGCCATAGCTGTGAATGAATTTCTTGGTCATAGTTGGAGAAAGGTTACTCCTAATTCCAACGAATCGTTAGGAGTTTTGATACTGAAAACTCGTGGACTTTTCCCAGAAGCTTATTGGTATTGGATTGGAGTAGGAGCATTGCTTGGTTATGTATTTCTGTTTAATTTTCTGTTCACCTTGGCTTTGCAATATCTAAGTCCATTTGCAAAGGATCAAGCAGGGCTATCCCAAGAGACATTGCTGGAGAGAAATGCCTCAACAACTGAAGAGTTAATTCAATTAACAAATGGAAAGAGCTCCTCTGAAATAAAGACGGTAGATGAAAGAAGTATGTCATCCAGGTCATTTTCTGGAAGAGTAAGTGATGACAAAGCTAACAGAAGTGGAAGGAGGGGTATGGTTCTTCCTTTTCAACCTTTATCCCTCACTTTTGATGAGATCAAATATTCTATAGACATGCCACAGGAAATGAAAAAGCAAGGAGTTTTTGAGGAACGTCTAGAACTTTTGAAGGGTGTTAGTGGTGTCTTTAGGCCAGGAGTACTAACAGCTCTGATGGGTGTAAGTGGTGCTGGTAAGACTACTTTGATGGATGTTCTTGCTGGAAGGAAAACTGGTGGATATATTGAAGGGAGCATCACAATATCTGGATACATAAAGAGGCAAGAAACGTTTGCACGCATCTCAGGATACTGTGAACAATTTGATATCCACTCACCTAATGTTACAGTTTATGAATCTTTGCTATATTCGGCCTGGCTTCGTTTACCTGGTGAAGTTGATGGCGCAACTAGAAAGATGTTCTTGGAGGAAGTCATGGAGCTAGTTGAGCTTAACTCAATAAGAGGAGCACTTGTTGGCTTGCCAGGAGAGACTGGTCTTTCAACTGAGCAGCGCAAGAGGCTTACAATTGCAGTTGAACTTGTAGCCAACCCATCAATAATTTTCATGGATGAGCCAACCTCAGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACTGTGAGGAACACTGTGAACACAGGACGAACTGTGGTTTGCACCATCCACCAGCCAAGTATTGATATATTTGATGCGTTTGATGAGCTGCTACTTTTGAAAATGGGAGGGGAGCAAATATATGCTGGTCCATTAGGCAGCCACTGTTCCCATCTGATTCAGTACTTTGAGGCTATTGAAGGAGTTCCTAAGATCAAGGATGGTTATAACCCTGCAACCTGGATGTTGGAAGTTACATCAGCAGGAACAGAAGCAACTCTTAAGGTCAACTTCACCAATGTGTACAGAAACTCAGAACTATATCGGAGAAACAAAGAATTGATCCAAGAGCTTAGTATACCACCTCAAGGTTCAAAGGATCTACATTTTGATAGTCAGTATTCACAGACTTTGGTGGCACAATGTAAAGCTTGTCTATGGAAACAACATTTATCATACTGGAGGAATACATCATATACAGCAGTTAGAATCCTATTCACAATGCTAATAGCATTGTTATTTGGGATCATATTTTGGGACATTGGCCTGAAAAGGAGAAAAGAGCAAGATCTTTTCAATGCTATGGGCTCAATGTATGCTGCAGTTACCTTCATTGGAGTACAAAATGCTGCCACAGTGCAGCCTATAATAGCTGTAGAGAGAACAGTTTTTTACAGAGAGAGAGCTGCTGGAATGTATTCAGCTTTGCCATATGCAATTGCACAGGTTGTTATTGAACTTCCCCACATCTTGGTTCAAACCCTGATGTATGGGATTATAGTATATGCCATGATGGGATTCGATTGGACCACATCAAAGTTCTTGTGGTTTCTTTTCTTCATGTTCTTCACTTTCTTATACTACACCTTATATGGTATGATGACCATGGCCATCACCCCCAATCCACATGTTGCTGCCATATTGTCCAGTTCATTCTTTGCAATATGGAGTCTTTTCTCAGGCTTCATCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATTTGCCCTGTTGCATGGACCTTGAATGGATTGGTGGCATCCCAATATGGAAATGACATGCAGAAGCTTGAGAATGGCCAAAGGGTTGAAGAATTTGTGAAGAGTTATTTTGGGTTTGAACATGATTTTCTTGGAGTGGTTGCAATTGTAGTGGCTGGTTTCTCACTTTTGTTTGCACTCATCTTTGCCTTTGGAATCAAAGTATTCAACTTTCAAAAAAGATGA 4341 0.4094 MEGSGISRVDSGRDSGSKIWRNNSMDVFSTSEREDDEEALKWAAIERLPTYLRIQRSILNSEDGKGREVDIKQLGLTERKIIVERLVKIAEEDNERFLLKLRERMDRAGLDIPTIEVRFEHVNVEAQVYVGGRSLPSMLNFFVNVIEGFLHCLHIIPSPKKPLHILQNISGIIKPRRMTLLLGPPGSGKTTLLLALAGKLGKDLKHYGRVTYNGHGLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGVGQNYEMLAELLRREKQAKIKPDPDIDAYMKAAALGRQRTRVVTDYILKILGLEVCADIMVGDGMIRGISGGQKKRVTTGEMLVGPVKVLFMDEISTGLDSSTTFQIVNSIQQSIHILNGTALVALLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSKKDQWQYWARKDEPHSFVTVKDFAEAFQLFHIGQKLGEELATPFDKSKCHPNALTTKKYGVNKKELLRACASREFLLMKRNSFVYIFKVTQLVYLAVMTTTLFLRTKMHHETVEDGGTYLGALFFAVMVAMFNGISELNMAIMKLPVFYKQRDLLFYPAWAYSIPPWILKIPVTLIEVAIWEGITYYAIGFDPNFLRLLKQYLILLCINMMASSLFRLMAALGRDVIVANTVGGFALLVVLVLGGFVISREDVHKWFVWGYWSSPLMYGQNAIAVNEFLGHSWRKVTPNSNESLGVLILKTRGLFPEAYWYWIGVGALLGYVFLFNFLFTLALQYLSPFAKDQAGLSQETLLERNASTTEELIQLTNGKSSSEIKTVDERSMSSRSFSGRVSDDKANRSGRRGMVLPFQPLSLTFDEIKYSIDMPQEMKKQGVFEERLELLKGVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSITISGYIKRQETFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPGEVDGATRKMFLEEVMELVELNSIRGALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFDAFDELLLLKMGGEQIYAGPLGSHCSHLIQYFEAIEGVPKIKDGYNPATWMLEVTSAGTEATLKVNFTNVYRNSELYRRNKELIQELSIPPQGSKDLHFDSQYSQTLVAQCKACLWKQHLSYWRNTSYTAVRILFTMLIALLFGIIFWDIGLKRRKEQDLFNAMGSMYAAVTFIGVQNAATVQPIIAVERTVFYRERAAGMYSALPYAIAQVVIELPHILVQTLMYGIIVYAMMGFDWTTSKFLWFLFFMFFTFLYYTLYGMMTMAITPNPHVAAILSSSFFAIWSLFSGFIIPLSRIPIWWKWYYWICPVAWTLNGLVASQYGNDMQKLENGQRVEEFVKSYFGFEHDFLGVVAIVVAGFSLLFALIFAFGIKVFNFQKR* 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1543 1446 Pfam ABC transporter 166 348 IPR003439 GO:0005524
Vra6g1543 1446 Pfam ABC transporter 877 1029 IPR003439 GO:0005524
Vra6g1543 1446 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 9 1446 - -
Vra6g1543 1446 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1446 - -
Vra6g1543 1446 Pfam ABC-2 type transporter 381 433 IPR043926 GO:0140359
Vra6g1543 1446 Pfam ABC-transporter N-terminal 90 141 IPR029481 -
Vra6g1543 1446 CDD ABCG_PDR_domain2 846 1084 IPR034003 -
Vra6g1543 1446 MobiDBLite consensus disorder prediction 810 838 - -
Vra6g1543 1446 Gene3D - 153 460 IPR027417 -
Vra6g1543 1446 SMART AAA_5 886 1087 IPR003593 -
Vra6g1543 1446 SMART AAA_5 175 407 IPR003593 -
Vra6g1543 1446 Pfam ABC-2 type transporter 1175 1388 IPR013525 GO:0016020|GO:0140359
Vra6g1543 1446 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
Vra6g1543 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
Vra6g1543 1446 Gene3D - 863 1097 IPR027417 -
Vra6g1543 1446 Pfam Plant PDR ABC transporter associated 719 780 IPR013581 -
Vra6g1543 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 849 1101 IPR003439 GO:0005524
Vra6g1543 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Vra6g1543 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1087 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1543 Vra-Chr6 30548167 30556469 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1543 K08711 - gmx:100810505 2640.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1543 6 30548167 30556469 Vra5g1171 5 18144808 18152041 PCT