Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1542 ATGGAGGGTAGTGAGACACAGAGAGTAGAGGGTCAACGAGTGAGAGGGTTTGACATGTGGAGGAACCATTGCATGGGGGTTTTCTCAACTTCTCAACGAGAAGAAGATGAGGAAACTCTCAAGTGTGTGGCAATAGAGAGACTCCTTGCAAGGGCATGCACCAAGAGAAGTGTGGTCAACCAAGTGGGAGGGAAAGCAGAAGAGTTTGACACCAAGCAATTGGAGTTATCAGAGAGAAAGAGCCTTCTAGATAGACTTGTGAAGATAGCAGAAGAAGATAATGAGAGGTTCTTGCTGAAGCTCAGGGAAAGGATGGACAGAGTTGGGCTTGAAATTCCAACAATTGAAGTTCGATTTGAGCATTTAAATGTTGAAGCACAAGTTTATGTTGGAAGCAGAGCATTGCCCACAGTACTCAACTTCTTTGTGAATGTGCTTGAGGGGTTCTTAAATTCTCTTCAAATAATTAAAAGTCCAAAGAAACCGTTACACATCCTTCAGAATGTTAGTGGAATCATAAAGCCTAAAAGAATGGCATTGCTTTTAGGACCACCAGGATCTGGAAAGACCACATTGCTGTTGGCATTGGCTGGAAGACTTGGTAAAGATTTGAAACATTCTGGGAGAGTAACATACAATGGACATGGTCTTGAGGAGTTTGTGCCACAAAGGACATCAGCGTACATAAGTCAACATGATAATCACATTGGAGAAATGACTGTGAGAGAAACACTGGCTTTCTCAGCAAGATGTCAAGGGATTGGAAAGAATTATGAAATGTTGACTGACCTCCTTAGAAGAGAGAAGGGAGCAAACATTGAACCAGATCCTGATGTTGATGCATATATGAAGGCAGCAGCACTAGAAGGGCAGCAGAACAGTGTGGTCATTGACTACATTCTTAAGATTTTGGGACTTGAAGTGTGTGCTGACATTATGGTAGGAGATGAAATGATAAGGGGTATCTCAGGAGGGCAGAAAAAGAGACTCACAACAGGGGAGATGATGGTTGGACCTATAAGGGTGTTGTTCATGGATGAGATATCAACTGGTTTGGACAGTTCCACAACTTTTCAGATTGTCAACTCTATCCGGCAATCCATCCATATTTTGAATGGAACTGCACTTGTGAGCTTATTACAGCCAGCACCAGAAACTTATGAACTATTTGATGATATAATACTATTAACAGATGGGCAAATTGTGTACCAAGGACCAAGAGAAAATGTACTCGAGTTTTTCGAATCAATGGGTTTCAAGTGTCCTGAAAGAAAAGGAGTTGCTGACTTCTTACAAGAAGTGACATCAAGGAAAGATCAATGGCAATATTGGGCACATAAAGATGAACCGTATAGCTTTGTCACTGTCAAGGATTTTGCTGAAGCCTTCCAGTCATTTCACATAGGTAAGCAACTTGGAGATGAAATGGAAAATCCTTTTGACAAATCTAAGTGCCATCCAAATGCATTGAGCACAAAGAAGTATGGTGTTAACAAGAAAGAGCTGTTGAGGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCCTTTGTCTACATATTCAAAGCCACACAACTTACTTATTTAGCTATCTTGACAACAACATTATTTCTCCGAACCAAGATGAGTCACTATACCAAGGAAGATGCAGAAGCTTACATGGGTGCTCTGTTCTTCACTGTCACTGTTGCAATGTTCAATGGAATATCAGAACTGAATATGACAATCATGAAACTTCCTGTCTTTTACAAGCAAAGAGACCACCTCCTTTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCATTAACCCTTGTAGAGGTTTCCATCTGGGAATGTATCTCTTATTATGCCATTGGCTTTGATCCAAATATTCTCAGGCTTCTAAAACAGTACTTGGTAGTCTTTTGCATTAACCAGATGGCATCAGCACTGTTTCGGTTGATGGCTGCACTAGGAAGGGATATTGTGGTGGCAAACACTGCTGGCACATTTGCACTGCTTGCAGTTACAGTTTTGGGAGGATTTGTGATTTCCAGAGAGGATGTGCACAAATGGTTTCTGTGGGGTTACTGGTCCTCACCATTGATGTATGGACAGAATGCTATAGCTGTGAATGAGTTTCTTGGGAATAGTTGGAGAAAGGTTAGTCTTAATTCCAGTGAAACATTGGGAGTACTGATACTGAAATCTCGTGGATTTTTCCCACAAGCGTATTGGTATTGGATTGGAATTGGAGCTTTGATTGGTTATGTTTTTCTCTTCAACTTTCTCTTCACCCTGGCTTTGCAATATCTCAGTCCATTCAGAAAAGATCAAGCAGGGCTATCCCAAGAGAAGTTGCTTGAGAGAAATGCTTCAATGGCTGAAGAGCTCATTCAGTTACCAACTAGAAAGAATTCTTCTGATACAAAGATGGACAAAGAAGCAAGTCCACCATCCTCTGGAGAATTTGGTAAAAAGAGCATAGCCAGTGACAGTGGAAAGAGAGGCATGGTTCTTCCTTTTCAACCTCTATTCCTGGCTTTTGACGAGATAAGATATTCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAATCAGTGAGAATCGTCTTGAACTTCTGAAAGGTATTAATGGTGCTTTTAGGCCAGGGGTGCTAACAGCTCTGATGGGTGTAAGTGGTGCTGGCAAGACTACTCTACTTGATGTTCTATCTGGAAGGAAAACAAGTGGATACATCGAAGGAAGCATCACAATATCTGGATACCCGAAGAAGCAAGAAACATTTGCTCGCATATCAGGATATTGTGAACAACTTGATATCCACTCACCCAATGTTACAGTTTTTGAGTCCTTGCTATACTCAGCATGGCTTCGTTTATCTCCAGAAGTTGATAAAGAAACTAGAAAGATGTTCATTGAGGAAGTTATGGAACTTGTAGAACTTAATTCATTAAGAGAAGCACTTGTTGGATTGCCAGGACAGACTGGATTGTCAACTGAACAGCGCAAGAGGCTTACAATTGCTGTTGAACTTGTAGCCAACCCATCAATAATTTTCATGGATGAGCCAACCTCAGGCCTTGATGCTAGAGCAGCTGCAATTGTGATGAGAACTGTAAGGAACACTGTTGACACAGGTCGAACTGTGGTCTGCACCATCCACCAGCCAAGCATTGATATATTTGACGCCTTTGATGAACTGTTACTTCTGAAATTGGGAGGGGAGCAGATATATTCTGGTCCAATTGGCAGAAACTCTTGCCATCTGATCCAGTACTTTGAGGCTGTTCAAGGAGTGCCTCAGATCAAAGATGGTTATAATCCAGCAACTTGGATGTTGGAAGTCACATCAGCAGCAAAAGAGGCGAGTCTTAAGATTGACTTCACAGATGTGTACAAAAATTCAGAGCTACACAGGAGAAACAAACAACTGATTCAGGAGCTCAGTGTACCATGTCAAGGTTCAAGAGATCTATACTTTCATAGTCAGCATTCACAGAGTTTCATGGCACAACTCATAGCGTGCCTATGGAAGCAACATTTGTCATATTGGCGGAACACATCATATACTGCAGTTAGACTCCTATTTACCACAACTTCAGGCTTATTGTTTGGGGTGATATTTTGGAACGTTGGTTTCAAAAGGAGAAAGGAGCAAGATCTTTTTGATGCAATGGGTTCAATGTATGCTGCTGTTACCTTCATTGGGGTTGTGAATGGTGCCTCAGTGCAGCCTATAGTAGCAATTGAGAGAACAGTCTTCTACAGAGAGAGAGCTGCAGGAATGTATTCAGCTTTACCATATGCTATTTCACAGGTTATTATAGAGCTTCCTCACATATTGGCTCAGGCTCTGATATATGGTATCATAGTATATGCCATGATGGGATTTGAATGGACAGCACCAAAGGTGTTTTGGAACCTCTATTACACCTACTTCAGTTTCTTATACTATACTTTCTATGGTATGATGACCATGGCCATAACTCCTAATCCACACATTGCTGGTATATTGTCCACCTCATTCTATGCAGTATGGTGCCTTTTCTCAGGCTTCATCATTCCTTTATCGAGAATACCAATATGGTGGAAATGGTACTATTGGATTTGCCCTGTTGCATGGACCTTGTATGGATTGGTGGCATCCCAATATGGAGATGACATGCAGAAGCTTGAGAATGGCCAAAGGGTTGAAGAATTTGTGAAGAGTTATTTTGGGTTTGAACATGATTTTCTTGGAGTGGTTGCAATTGTAGTGGCTGGTTTCTCCCTTTTGTTTGCACTCATCTTTGCCTTTGGAATCAAAGTATTCAACTTCCAAAAAAGATGA 4335 0.4129 MEGSETQRVEGQRVRGFDMWRNHCMGVFSTSQREEDEETLKCVAIERLLARACTKRSVVNQVGGKAEEFDTKQLELSERKSLLDRLVKIAEEDNERFLLKLRERMDRVGLEIPTIEVRFEHLNVEAQVYVGSRALPTVLNFFVNVLEGFLNSLQIIKSPKKPLHILQNVSGIIKPKRMALLLGPPGSGKTTLLLALAGRLGKDLKHSGRVTYNGHGLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGIGKNYEMLTDLLRREKGANIEPDPDVDAYMKAAALEGQQNSVVIDYILKILGLEVCADIMVGDEMIRGISGGQKKRLTTGEMMVGPIRVLFMDEISTGLDSSTTFQIVNSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWAHKDEPYSFVTVKDFAEAFQSFHIGKQLGDEMENPFDKSKCHPNALSTKKYGVNKKELLRACASREFLLMKRNSFVYIFKATQLTYLAILTTTLFLRTKMSHYTKEDAEAYMGALFFTVTVAMFNGISELNMTIMKLPVFYKQRDHLLYPSWAYSLPPWILKIPLTLVEVSIWECISYYAIGFDPNILRLLKQYLVVFCINQMASALFRLMAALGRDIVVANTAGTFALLAVTVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGNSWRKVSLNSSETLGVLILKSRGFFPQAYWYWIGIGALIGYVFLFNFLFTLALQYLSPFRKDQAGLSQEKLLERNASMAEELIQLPTRKNSSDTKMDKEASPPSSGEFGKKSIASDSGKRGMVLPFQPLFLAFDEIRYSVDMPQEMKSQGISENRLELLKGINGAFRPGVLTALMGVSGAGKTTLLDVLSGRKTSGYIEGSITISGYPKKQETFARISGYCEQLDIHSPNVTVFESLLYSAWLRLSPEVDKETRKMFIEEVMELVELNSLREALVGLPGQTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYSGPIGRNSCHLIQYFEAVQGVPQIKDGYNPATWMLEVTSAAKEASLKIDFTDVYKNSELHRRNKQLIQELSVPCQGSRDLYFHSQHSQSFMAQLIACLWKQHLSYWRNTSYTAVRLLFTTTSGLLFGVIFWNVGFKRRKEQDLFDAMGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYAISQVIIELPHILAQALIYGIIVYAMMGFEWTAPKVFWNLYYTYFSFLYYTFYGMMTMAITPNPHIAGILSTSFYAVWCLFSGFIIPLSRIPIWWKWYYWICPVAWTLYGLVASQYGDDMQKLENGQRVEEFVKSYFGFEHDFLGVVAIVVAGFSLLFALIFAFGIKVFNFQKR* 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1542 1444 Pfam ABC-2 type transporter 381 432 IPR043926 GO:0140359
Vra6g1542 1444 CDD ABCG_PDR_domain2 844 1082 IPR034003 -
Vra6g1542 1444 Gene3D - 861 1089 IPR027417 -
Vra6g1542 1444 SMART AAA_5 884 1076 IPR003593 -
Vra6g1542 1444 SMART AAA_5 175 400 IPR003593 -
Vra6g1542 1444 Pfam ABC transporter 166 348 IPR003439 GO:0005524
Vra6g1542 1444 Pfam ABC transporter 875 1027 IPR003439 GO:0005524
Vra6g1542 1444 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 18 1444 - -
Vra6g1542 1444 Pfam ABC-transporter N-terminal 73 141 IPR029481 -
Vra6g1542 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Vra6g1542 1444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1083 IPR027417 -
Vra6g1542 1444 PANTHER ATP-BINDING CASSETTE TRANSPORTER 18 1444 - -
Vra6g1542 1444 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
Vra6g1542 1444 Pfam ABC-2 type transporter 1173 1386 IPR013525 GO:0016020|GO:0140359
Vra6g1542 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 847 1099 IPR003439 GO:0005524
Vra6g1542 1444 Pfam Plant PDR ABC transporter associated 719 780 IPR013581 -
Vra6g1542 1444 MobiDBLite consensus disorder prediction 804 829 - -
Vra6g1542 1444 Gene3D - 152 458 IPR027417 -
Vra6g1542 1444 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1542 Vra-Chr6 30534655 30545113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1542 885 1059 Calmodulin-binding Proteins AT2G36910 25.543 7.79e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1171 5 18144808 18152041 Vra6g1542 6 30534655 30545113 PCT