Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1539 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTGAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAACAACAGCAACAACAACAACAATCACAACCTCAGCAGTCACAACATCAACAACAACAACAGCAGCAACAACAACACATTCAGATGCAACACATCCTGTTACAGAGGGCTCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAACCACAGCAGCAACAACAACAACAACAGCCACAACATCAACAACCACCACCTCAGCAGCAGCAACAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCCGTTTTAACTCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGTTCTGGTATGCTTCAACAACAGAAACAACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAGCACCAACTAATTCTGGCACAACAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTTGGTGACGTGGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCATCAACAACAGCAGAATGCCAATCCACAACAACAGCAGCAGCAACTGCAACAACATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATAGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCCCCCTCGACTCCCTCGACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGCAGTTCTTCGAAGCCATTAATGATGTTTGCTGCCGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACTGACCCGAGGGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTTACATTTTCTGAGGTAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTACAGCAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTGCGAAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTCGATGGTGAGATCCGATATTGGAGTATTAAGAATGGAAATTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACGCAAGTATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCAGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCAGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTATGGAAGTGA 2682 0.4459 MSQTNWEADKMLDVYIHDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQSQPQQSQHQQQQQQQQQHIQMQHILLQRAQQQQQQQQQQQQQPQQQQQQQQPQHQQPPPQQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLTPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGMLQQQKQPFIQSPQPFHQLPMLTPQHQHQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHHQQQQNANPQQQQQQLQQHTLSNQQSQSSNHNMHQQDKIGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFAADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLQQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDGEIRYWSIKNGNCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYESLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1539 893 Gene3D - 587 739 IPR015943 GO:0005515
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 732 - -
Vra6g1539 893 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vra6g1539 893 MobiDBLite consensus disorder prediction 250 269 - -
Vra6g1539 893 MobiDBLite consensus disorder prediction 232 269 - -
Vra6g1539 893 SMART Lish 8 40 IPR006594 GO:0005515
Vra6g1539 893 SUPERFAMILY WD40 repeat-like 603 893 IPR036322 GO:0005515
Vra6g1539 893 Pfam WD domain, G-beta repeat 690 727 IPR001680 GO:0005515
Vra6g1539 893 Pfam WD domain, G-beta repeat 856 893 IPR001680 GO:0005515
Vra6g1539 893 Pfam WD domain, G-beta repeat 772 806 IPR001680 GO:0005515
Vra6g1539 893 Pfam WD domain, G-beta repeat 647 683 IPR001680 GO:0005515
Vra6g1539 893 Pfam WD domain, G-beta repeat 609 640 IPR001680 GO:0005515
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 736 IPR001680 GO:0005515
Vra6g1539 893 Pfam LisH 10 36 IPR006594 GO:0005515
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 816 IPR001680 GO:0005515
Vra6g1539 893 MobiDBLite consensus disorder prediction 417 542 - -
Vra6g1539 893 SMART WD40_4 644 683 IPR001680 GO:0005515
Vra6g1539 893 SMART WD40_4 687 727 IPR001680 GO:0005515
Vra6g1539 893 SMART WD40_4 602 641 IPR001680 GO:0005515
Vra6g1539 893 SMART WD40_4 813 852 IPR001680 GO:0005515
Vra6g1539 893 SMART WD40_4 769 807 IPR001680 GO:0005515
Vra6g1539 893 SMART WD40_4 854 893 IPR001680 GO:0005515
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Vra6g1539 893 MobiDBLite consensus disorder prediction 417 454 - -
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 640 IPR001680 GO:0005515
Vra6g1539 893 CDD WD40 605 893 - -
Vra6g1539 893 Gene3D - 740 893 IPR015943 GO:0005515
Vra6g1539 893 MobiDBLite consensus disorder prediction 90 114 - -
Vra6g1539 893 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 893 IPR044716 GO:0003714
Vra6g1539 893 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 893 - -
Vra6g1539 893 ProSitePatterns Trp-Asp (WD) repeats signature. 670 684 IPR019775 -
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 861 893 IPR001680 GO:0005515
Vra6g1539 893 MobiDBLite consensus disorder prediction 465 524 - -
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
Vra6g1539 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 861 893 - -
Vra6g1539 893 MobiDBLite consensus disorder prediction 135 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1539 Vra-Chr6 30452847 30472840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1539 689 892 Miscellaneous Gene Families AT5G08390 26.794 2.04e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vra6g1539 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1539 - - gmx:100779972 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1539 6 30452847 30472840 Vra5g1167 5 18093354 18102247 PCT