Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1536 ATGGCTCAGCAAAACAATGCCAACAACAACGTTGTGACCCAACAAAAACATCAACAGCTTCTGAAGCCCATGTTCCATGACTTTCTTGGCACTAAGACCACCAACCCCATTCACTCCAATGTGCTCTATGCCCCCCAAACCTCTCATCTTTACGTCCCCCGCTCCTCCCTATCTTCCACTACCGTGTTCAGCGGCGCTGCCACCTCCCACCACGCTTCCGAAAAACAAACTGGGAATCATCTTGAGGGAGTTCCATACTATGGTCCGAAGAGGGAATCCTGTGGCATTGAGATAGCTAACAGAGTAGTGAGAAAGAAGAAAAGTAATTCTGATACCACTTTTACCTTTTCTTCCAGAGATTCCTTCCAAATGGTCCCTCATTCCCTTCCAAATTCACATTCGGTGAAGATGCTTCGGAATGCAGCTACTTCTGATTGCCTTAGAAGGTCTAATGGTGATGATATGTTTCTTCCTATGCAGTCACTGAAGCCAACAACCAGTGGCTCTCAGATATTGCAGACTCCCACTGGAACTAAGTCTGATGCAAATAAATTGGAAAGATCAATCCTCATGAATTTTGGTCCTTTCATGCAGTTAGCTCCTCTTATGGACCAAAGAACTTCAAACAAGATGGGTGATACCAGTGCTGCTCCTTCATTTATCTCTCAGTTAGCTGCTGATGAAGGGTCTAGAACCAGAATCAAGGGTCCTGGGCTTTTCAGTTCCATTAACACAATCAATGCAGTCACTGAAAAGACTTCTTCCATGCTTGGTGGCAGCAGAGCAATGCCTGTGACAAACATAGCAGACCCTGAATCTTCTACAATTCTGAATCAACGCGGCTCATCATCTGCCACCTGTCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTGTTTGATGATGTACAGCCTAATAAGGCTGATGTTATAATGGATTTAGCTGGCTCTAATGGTGGATCTTGGGCCACAGCATTCTCTTCCAAATCTTCTGTAAGGCTACACCATGATAGTAACTTGGAACGAAATTCTAGTCATCATGGTGGTCAACTGACTTCTACAACAGCCGAAGTTACAAGAAAATCTGGTTCAAGCTGCAAATCCCTGTTCTGA 1113 0.4465 MAQQNNANNNVVTQQKHQQLLKPMFHDFLGTKTTNPIHSNVLYAPQTSHLYVPRSSLSSTTVFSGAATSHHASEKQTGNHLEGVPYYGPKRESCGIEIANRVVRKKKSNSDTTFTFSSRDSFQMVPHSLPNSHSVKMLRNAATSDCLRRSNGDDMFLPMQSLKPTTSGSQILQTPTGTKSDANKLERSILMNFGPFMQLAPLMDQRTSNKMGDTSAAPSFISQLAADEGSRTRIKGPGLFSSINTINAVTEKTSSMLGGSRAMPVTNIADPESSTILNQRGSSSATCQMTIFYGGQAHVFDDVQPNKADVIMDLAGSNGGSWATAFSSKSSVRLHHDSNLERNSSHHGGQLTSTTAEVTRKSGSSCKSLF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1536 370 PANTHER PROTEIN TIFY 8 56 346 - -
Vra6g1536 370 MobiDBLite consensus disorder prediction 339 370 - -
Vra6g1536 370 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 56 346 IPR040390 -
Vra6g1536 370 ProSiteProfiles Tify domain profile. 282 317 IPR010399 -
Vra6g1536 370 SMART tify_2 282 317 IPR010399 -
Vra6g1536 370 Pfam tify domain 284 316 IPR010399 -
Vra6g1536 370 MobiDBLite consensus disorder prediction 344 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1536 Vra-Chr6 30395312 30399607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1536 1 315 Tify Gene Family AT4G32570 31.118 8.78e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra6g1536 tify 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1536 - - var:108319287 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1536 6 30395312 30399607 Vra5g1150 5 17971094 17978516 PCT