Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1533 ATGGATAGGGAAAATGCTGTAATAGGTGTGAAAGACAGTGTTCGAGTGACGCGAGCAATGGCGAGAGCATTGAAAGAGGTCTCTGCCTCTTCAAGACCATGCTTTAAGAAACAGAGAAAAGTGGAAAAGAGCAGCAGAGCAGCGCTGACAGATGTAACCAATGAATACAGAAAACCGCAGCTTAATAAGTGCACTGTGCCCAGTTTTCAGACAAGAGGAGGTTATAAGAAGCGAAACAGAGTTGGAGCTTCTAATGTCTCTATGCAAGTTTGGTCAACTCAAGATGTTAGAACAAAGTCAGCAAAAGATTTATCCGTAATATCGATGGTACAGTCACATGAACCTGTTGTTGCTGAAAGGCTGGAAGACAGAGAGCTAGTGCCACCTTCTATGTCTGTCATGGATGGTCCCCAGCTTTCAATGCAGGACTCTATGCAGTCTGATGAACTCCTTAGCTCTCCGAACAAAGATATTGATATGATTTCAGAGAAACTAAAGCATTCGGATGGTTTGGGCATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGTGTTCATATGCCCCTGATATATACAATAATATATGTGTCAGAGAGTTTGAAAGGAGACTAACCAATTACATGGGCGAGCTGCAGAAAGACATCACTCCAAGCATGCGCGCAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGTTAGTTCCAGATACTCTTTACCTTACTGTGAATCTCATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAAGGACTACAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCCCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACTCAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAATATTCTTGTAAGGTTTCTTACGTTGAAGTGGAATTTCTGGCAAATTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTCGCAGTTTCGACCATCCATGATAGCTGCGTCTGCTGTTTTACTGGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATTCAACTATGGAACACTATACGAATTACAAAGTGTCAGAGCTTAAAACTACTGTCCTTGCACTGGCAGATTTGCAACTTAATACCAAAGGCTGTCCTCTGAATGCTATACGAGAAAAATATAAACAGCAGAAGTTCATGAGTGTGGCAAATTTGTCTCCAAAACCAGTGCAGACACTTTTTGAGGCTAAGTATAAAGTTGTAAATGATGGTATCTCAGAAGACTAA 1395 0.4108 MDRENAVIGVKDSVRVTRAMARALKEVSASSRPCFKKQRKVEKSSRAALTDVTNEYRKPQLNKCTVPSFQTRGGYKKRNRVGASNVSMQVWSTQDVRTKSAKDLSVISMVQSHEPVVAERLEDRELVPPSMSVMDGPQLSMQDSMQSDELLSSPNKDIDMISEKLKHSDGLGIVDIDSVELKDPQVWCSYAPDIYNNICVREFERRLTNYMGELQKDITPSMRAILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQGLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFILAAQYSCKVSYVEVEFLANYLAELTLVEYSFSQFRPSMIAASAVLLARWTLNQSEHPWNSTMEHYTNYKVSELKTTVLALADLQLNTKGCPLNAIREKYKQQKFMSVANLSPKPVQTLFEAKYKVVNDGISED* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1533 464 Gene3D - 193 440 - -
Vra6g1533 464 Gene3D - 207 319 - -
Vra6g1533 464 Pfam Cyclin, N-terminal domain 193 319 IPR006671 -
Vra6g1533 464 PANTHER CYCLIN-A2-4 34 450 - -
Vra6g1533 464 PIRSF Cyclin_A_B_D_E 8 456 IPR039361 -
Vra6g1533 464 SUPERFAMILY Cyclin-like 320 443 IPR036915 -
Vra6g1533 464 SUPERFAMILY Cyclin-like 182 318 IPR036915 -
Vra6g1533 464 CDD CYCLIN 319 411 IPR013763 -
Vra6g1533 464 SMART cyclin_7 325 413 IPR013763 -
Vra6g1533 464 SMART cyclin_7 228 312 IPR013763 -
Vra6g1533 464 SMART Cyclin_C_2 321 444 IPR004367 -
Vra6g1533 464 Pfam Cyclin, C-terminal domain 321 443 IPR004367 -
Vra6g1533 464 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Vra6g1533 464 CDD CYCLIN 222 311 IPR013763 -
Vra6g1533 464 PANTHER CYCLINS 34 450 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1533 Vra-Chr6 30352592 30358284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1533 12 450 Core Cell Cycle Gene Families AT5G25380 51.656 3.55e-138 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1533 K06627 - gmx:100777132 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1533 6 30352592 30358284 Vra5g1148 5 17951157 17956948 PCT