Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1531 ATGGAGCGGCCTGGAAGCTTAAATGGCAGTCAGCATGTGATAGAAATAGGTGGGAGTTCCGATGCTTCTACTTCAACTGCGACACATCATGATAGCAATTATAATGGCACACATGTTACGCTACACGAAGAAAGGGTTACCGGTGCAAGGACGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCAAATGGGTCTAATAGTCGGAATTCCTCGTTCATGAGACGCGGGGATACGCGTAGGAATAGGAGTCCCGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCTTCTATCGTTGTTTTATCTTTGTCAAGGCATGAACATCCTCGTACTCCATTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATACGAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACTAGTGGTGGAGAAGATGGTCAGGCTGTTGCATCCACCAGAAGCAATCAAGCCTCTGTGTTGATGAATAGAAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTTGGGGTTAGAGAGGACATGTCACAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGTACTGAGAAAGAGCGAGTTATATCTGGAGAAGATGCAGTATGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAATGATGTTGGTGAGAACTCAACAGGATTGGTCTCAAGTGAAGATGCCAACCAACATCGGAGTGAGAGCAGGATTCAGAATGGCCTTGCGAATACATCACTTTAG 1122 0.4314 MERPGSLNGSQHVIEIGGSSDASTSTATHHDSNYNGTHVTLHEERVTGARTPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHTREQDSSQSRQTSPRINDPSGTLLFSSRTSGGEDGQAVASTRSNQASVLMNRRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENSTGLVSSEDANQHRSESRIQNGLANTSL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1531 373 MobiDBLite consensus disorder prediction 1 35 - -
Vra6g1531 373 MobiDBLite consensus disorder prediction 348 373 - -
Vra6g1531 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 346 IPR013083 -
Vra6g1531 373 SMART ringv_2 297 339 IPR011016 GO:0008270
Vra6g1531 373 SMART ring_2 298 338 IPR001841 -
Vra6g1531 373 MobiDBLite consensus disorder prediction 48 85 - -
Vra6g1531 373 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Vra6g1531 373 CDD RING-H2_RNF111_like 297 341 - -
Vra6g1531 373 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 203 364 - -
Vra6g1531 373 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 204 - -
Vra6g1531 373 Pfam Ring finger domain 298 339 IPR001841 -
Vra6g1531 373 MobiDBLite consensus disorder prediction 12 35 - -
Vra6g1531 373 SUPERFAMILY RING/U-box 290 344 - -
Vra6g1531 373 MobiDBLite consensus disorder prediction 50 74 - -
Vra6g1531 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 203 364 - -
Vra6g1531 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1531 Vra-Chr6 30329664 30337586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1531 76 348 C3H Transcription Factor Family AT1G80400 50.779 2.39e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1531 - - gmx:100778728 621.698