Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1528 ATGCTACAGAAAGACAAGGAAATTGTTGGCAAAGAGGGTAAAGATATTGAAATGGAAGAAGGCACTCATGAGAAGAAGGAAGAAACCCTACCACCTGGTTTTCGCTTTCACCCCACAGATGAAGAACTCATTTGTTACTATCTCACAAACAAGATTTCAGATTCTGATTTTACACCAAAAGCAATAGCTGTTGTAGATCTCAACAAATGTGAGCCATGGGATCTTCCTGGAAAGGCGAAAATGGGACAAAAAGAATGGTACTTCTTCAACCTAAGGGATCGCAAATATCCAACAGGTGTGAGAACAAACAGAGCAACGAACACAGGGTACTGGAAAACCACTGGAAAAGACAAAGAGATCTTGAACAGTGTTACATCGGAGTTGGTCGGCATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAAATCACTAAGCAAGATGAATGGGTGGTTTGCCGGGTGTTCCGGAAGAGTGGTGGTGCAAAAAAGTTCCCGTCTAATTCGAACCACAGCAGAACACTGAACCCGTATGGTGTTGAAGTTAGCCCTAGCGTTGTGCCACCCCAAATGATGCATCTGGGTGACCCTTCTTCTGCTCATTTCAATTTCCTTTATGGATCAAGAAACTACATGATCAACCCTTCAGAGTTCAGAGCTGGTGGATCCACAAGTGTCAATGTGACGAACCTCCCAATAATGCATACCCATTTCAACAATCCACCACCACCACCACCAGGAGGAGGAGGAGGAGGAGGAGGGTTCAGCATTTCTGGCCTTAATTTGAACCTGGGAGGAGCAGCAGTTTCCACTGCTGCCACCACACAAACACAGCCCCTTCTGAAGCCAATGATAGCACCACCACAGCCACTTTCTGCTCACACAGTGGCCCAAATGAATCATGATTTCAGTTCCAACATGGTGACACCTGGTGCTGCTCTTGCTGCTGACAGTGTAGTCTATGGTTCAGACATGACCAATGCAAATTCTCATGGCAATAGGTTCATGGGCATGGACCACTGCATGGATCTAGACACTTACTGGCCTTCCTACTGA 1119 0.4567 MLQKDKEIVGKEGKDIEMEEGTHEKKEETLPPGFRFHPTDEELICYYLTNKISDSDFTPKAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKITKQDEWVVCRVFRKSGGAKKFPSNSNHSRTLNPYGVEVSPSVVPPQMMHLGDPSSAHFNFLYGSRNYMINPSEFRAGGSTSVNVTNLPIMHTHFNNPPPPPPGGGGGGGGFSISGLNLNLGGAAVSTAATTQTQPLLKPMIAPPQPLSAHTVAQMNHDFSSNMVTPGAALAADSVVYGSDMTNANSHGNRFMGMDHCMDLDTYWPSY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1528 372 ProSiteProfiles NAC domain profile. 30 179 IPR003441 GO:0003677|GO:0006355
Vra6g1528 372 Gene3D NAC domain 39 182 IPR036093 GO:0003677|GO:0006355
Vra6g1528 372 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 369 - -
Vra6g1528 372 MobiDBLite consensus disorder prediction 1 33 - -
Vra6g1528 372 Pfam No apical meristem (NAM) protein 31 157 IPR003441 GO:0003677|GO:0006355
Vra6g1528 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 369 - -
Vra6g1528 372 SUPERFAMILY NAC domain 25 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1528 Vra-Chr6 30213692 30216667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1528 18 372 NAC Transcription Factor Family AT2G24430 47.135 3.71e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g1528 NAM 2.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1528 - - pvu:PHAVU_001G059900g 560.066