Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1500 ATGTTCTCCAGCTCTCAATTCGATGTCACAACCGGCTTCTCCGGCGGCGGATTCATGTCCTCTCAGCCGTCTAACTTCAACGATTCCTCTCCCGCACCGCCAAAAAGTCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATTAGTGAAGCCTCTCAAACCGGTGACGAAAAATCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTGGGGATGGCGTTTGAGAAAGTTGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACGAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTCCGTGTTTTTGGGCATTTGAAAAGCTTCCAAGGCGTTAGGCAACTTGTTGCTTTCTCTGTCAGGCCCGTGACAAATTTTGAGGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTCCGCTCCAAACTGAAGTTGGAAGGAATCACTTCTACAAATCCTTCGTCCGTCTCATCTTTGAACACTCCTGTCAAAAATGCCTCAAATGGATCTCAGCCGCCCACATCAACTCCAGCATATGTACAGTATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATTGATTACCTGCAGCAGCATTCAGATATGTCAGATGAACGGGGAATACATGTCAATGAATTATCCCGGGAGCTCAAGCTTCCAATGGACAGGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTTTAGTATACTCTACCATTGATGACTACCATTACAAACAAGCTTGA 834 0.4472 MFSSSQFDVTTGFSGGGFMSSQPSNFNDSSPAPPKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMAFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFEEIPFHFIDCIHNHLRSKLKLEGITSTNPSSVSSLNTPVKNASNGSQPPTSTPAYVQYSVDGLKDCDKLIIDYLQQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1500 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 277 - -
Vra6g1500 277 MobiDBLite consensus disorder prediction 176 203 - -
Vra6g1500 277 Gene3D - 207 277 IPR036388 -
Vra6g1500 277 PANTHER REPLICATION PROTEIN A-RELATED 1 277 IPR040260 -
Vra6g1500 277 MobiDBLite consensus disorder prediction 14 42 - -
Vra6g1500 277 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Vra6g1500 277 Gene3D - 38 168 IPR012340 -
Vra6g1500 277 CDD RPA2_DBD_D 72 165 - -
Vra6g1500 277 Pfam Replication protein A C terminal 186 271 IPR014892 -
Vra6g1500 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Vra6g1500 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Vra6g1500 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1500 Vra-Chr6 29806672 29810880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1500 1 275 Core DNA Replication Machinery Family AT2G24490 49.281 7.85e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1500 K10739 - gmx:100802512 471.085