Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1496 ATGCCAGGGTTAACGTGCAACGCTTGCAACACGGAATTCAACGATGACACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCACCGCTACAATCTCAAACGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCATTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAGAATAAAGTGAGTGAGACCCCCATGCTGTATACCTGCGGTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCTTCTGAAGGAACTAGTGATGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTGATGGAGCTGCCAAGTCCTTGACCGGTTTGAATGTGAATGAGCAAGGTGAAAATGTCGATATGGATGAAGATGAAGATGAAGACGAGAATGATGAGGATGACTTTGAGTTAGACCCCTCATGTTGCTTTATGTGTGATCAGAAGCACAAAACAATTGAAGACTGCATGGTTCACATGCACAAGCATCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAAAGGGACTACGAGTGTCTGTACTGCAATGATCGATGTTATCCTTTCAGCAGCTTAGAAGCAGTCAGGAAACATATGGCAGCAAAAAGCCACTGTAAAGTGCATTTTGGTGATGGTGATGATGAGGAGGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGTAGTTATGTGGATGATCAGGGCAAGCAGCTCATTGTATCTGGTGAAACAGCTAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCGTAATCACCAGGAAATCTGGTGATAGAATATCAACAAGAACACTTGGTTCTCGTGAATTTTTGCGTTACTATCGTCAGAAACCCCGACCATCACCAGCAAATAGTATGGCCATCACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTACCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCATATTAG 1248 0.4391 MPGLTCNACNTEFNDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKVSETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSDADEKAIIKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEDDLVDGAAKSLTGLNVNEQGENVDMDEDEDEDENDEDDFELDPSCCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYECLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDDEEEVELEEFYDYSSSYVDDQGKQLIVSGETANNVELVGGSELVITRKSGDRISTRTLGSREFLRYYRQKPRPSPANSMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRTKIAMKSNVIRNLPKNVPY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1496 415 MobiDBLite consensus disorder prediction 112 182 - -
Vra6g1496 415 PANTHER ZINC FINGER PROTEIN-RELATED 1 415 - -
Vra6g1496 415 Pfam C2H2 type zinc-finger (2 copies) 190 291 IPR041661 -
Vra6g1496 415 SUPERFAMILY beta-beta-alpha zinc fingers 173 240 IPR036236 -
Vra6g1496 415 MobiDBLite consensus disorder prediction 165 182 - -
Vra6g1496 415 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Vra6g1496 415 MobiDBLite consensus disorder prediction 84 103 - -
Vra6g1496 415 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vra6g1496 415 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Vra6g1496 415 MobiDBLite consensus disorder prediction 130 146 - -
Vra6g1496 415 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Vra6g1496 415 PANTHER ZINC FINGER PROTEIN 622 1 415 IPR040025 -
Vra6g1496 415 SMART c2h2final6 239 266 IPR013087 -
Vra6g1496 415 SMART c2h2final6 68 92 IPR013087 -
Vra6g1496 415 SMART c2h2final6 4 28 IPR013087 -
Vra6g1496 415 SMART c2h2final6 188 210 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1496 1 415 C2H2 Transcription Factor Family AT4G31420 66.348 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g1496 zf-C2H2_2 3e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1496 K14816 - gmx:100796317 703.36