Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1493 ATGAGTTCTCAAAGCCTCATTTTGCATGCTAATGTGTTTCTTCTTCTGCTTATAGCTGGTTGTCATGCTCAACTTCGAGTTGACTACTACAGAAACACATGTCCAAATGTTGAATCGATTGTTCGGAGAGCAGTTGAGATGAAACTTCAGCAGACAGATGTGACAGTTCCTGCTACACTTAGGCTGTTCTTCCATGATTGTTTTGTTAGGGGGTGTGATGCTTCTGTGATGCTAGCTTCAACAAACCACACATCTGAGAAGGATGATCCTATAGATCTTTCACTAGCTGGTGATGGATTTGACACTGTGATCAAAGCCAAGGCTGCAGTTGACAGTGTACCTGGCTGCCAGAATAAGGTTTCATGTTCTGACATTTTGGCAATGGCAACTAGGGATGTCATAGCTCTGGCAGGAGGACCATCTTATGCAGTAGAGCTGGGAAGGCTAGATGGGAGAGTCTCAACAAAAGGAAGTGTTAGACACCATATACCTGAGCCTGATTTAGAGCTAGAACAACTGAACCAAATGTTTGCTTCACATGGACTAACCCTAACTGATCTAGTTGCTCTATCAGGAGCACATACCGTTGGATTCTCTCATTGCAGCCAGTTCTCTAAACGTATTTACAACTTCAAAGGAAATAAAAGCATTGATCATACACTTAATCCTGCGTATGCAATACAGCTCCAACAAGACTGTCCAAAAAATGCAGACCCCGAAACAGTGGTTCAGATGGACCCAATAACACCAAAGATATTTGATAATCAATACTACAAGAATCTTCAGCAAGGAAAAGGGCTTCTTGCTTCTGATCAAGCTTTGTTTACTCATAAAAGAACAAGAGAGCTAGTGAACTTATTTGCGTCCAACAACACACTCTTTGAAACGTCTTTTGTAAGTGCCATAACAAAGTTAGGACGAATAGGGATTAAAACAGGAAATCAGGGTGAAATCCGACGTGATTGCTCGATGGTTAACTGA 981 0.4169 MSSQSLILHANVFLLLLIAGCHAQLRVDYYRNTCPNVESIVRRAVEMKLQQTDVTVPATLRLFFHDCFVRGCDASVMLASTNHTSEKDDPIDLSLAGDGFDTVIKAKAAVDSVPGCQNKVSCSDILAMATRDVIALAGGPSYAVELGRLDGRVSTKGSVRHHIPEPDLELEQLNQMFASHGLTLTDLVALSGAHTVGFSHCSQFSKRIYNFKGNKSIDHTLNPAYAIQLQQDCPKNADPETVVQMDPITPKIFDNQYYKNLQQGKGLLASDQALFTHKRTRELVNLFASNNTLFETSFVSAITKLGRIGIKTGNQGEIRRDCSMVN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1493 326 Gene3D Peroxidase, domain 2 164 305 - -
Vra6g1493 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PANTHER PEROXIDASE 5 326 - -
Vra6g1493 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vra6g1493 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vra6g1493 326 SUPERFAMILY Heme-dependent peroxidases 24 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 Pfam Peroxidase 43 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PANTHER - 5 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 Gene3D - 28 326 - -
Vra6g1493 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra6g1493 326 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1493 Vra-Chr6 29647529 29650176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1493 1 326 Peroxidase AT2G18980 61.350 8.93e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1493 K00430 - gmx:100793327 571.237