Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1490 ATGTTGTCTGCCTCAGCATTGGATCATTCACACACGCCAGAGAGGAAGAACATCACCACCAACACCACCAACACCAACAGCAGCAGCAGAAAAAGATTTGGTGGTAATAAGCAATTGATGGATGAGTGTTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCACGTATTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCCTCTAGATCTACTAGTAACCCAGCAAAACGAACTACAGAACCTCAGAAAATATTATCCTCTCAGTTTGAGGCAGATTCGCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAAGAAATTCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGACTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGACCTGGACTGCGTGGACAAGAAATCAAAAACCCTGGTCATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATCATTGGATCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACACTTTCTCACCGGAATTCCAGTTTGGCACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCAACATTCTGGTGATGTTAATCCTCATGGCATTTCATGTCAGATTTCTGTGGAGAATCCTTTAACTTGCTCAAGCTCTTGTGATTCACCAGGCAATAGCAGTGAGGACTTACCTCTGTCTCCTCCGGCAGAAGACGACATCACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACAGTATGTCCAGTATTGAAGGGGTAGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGGGAGCAAATTCTTATGTTTGGGACAGACATCTACGAAAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTTTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATAAGAATTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTACTGGAGATGAAGTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTCATTGA 1692 0.4314 MLSASALDHSHTPERKNITTNTTNTNSSSRKRFGGNKQLMDECSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRTTEPQKILSSQFEADSPESSSVQDEPESSELIPPSEEIQRGPKSRGGSSDSSNVRLMEVGSSSSVSNTRSQRNLNQRPGLRGQEIKNPGHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTLSHRNSSLAPVRTQRSLSGHARGRLSSQGNENPLATSEFQHSGDVNPHGISCQISVENPLTCSSSCDSPGNSSEDLPLSPPAEDDITDSLNGDSFWHYSMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHKNCNEDKDDIKCCICQEEYVTGDEVGDLPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPH* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1490 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 40 554 - -
Vra6g1490 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 40 554 IPR045191 GO:0061630
Vra6g1490 563 MobiDBLite consensus disorder prediction 82 220 - -
Vra6g1490 563 MobiDBLite consensus disorder prediction 172 210 - -
Vra6g1490 563 MobiDBLite consensus disorder prediction 1 52 - -
Vra6g1490 563 MobiDBLite consensus disorder prediction 364 387 - -
Vra6g1490 563 SUPERFAMILY RING/U-box 503 553 - -
Vra6g1490 563 Pfam Ring finger domain 508 550 IPR001841 -
Vra6g1490 563 MobiDBLite consensus disorder prediction 364 378 - -
Vra6g1490 563 MobiDBLite consensus disorder prediction 269 345 - -
Vra6g1490 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 554 IPR013083 -
Vra6g1490 563 MobiDBLite consensus disorder prediction 237 345 - -
Vra6g1490 563 SMART ring_2 509 549 IPR001841 -
Vra6g1490 563 MobiDBLite consensus disorder prediction 16 34 - -
Vra6g1490 563 ProSiteProfiles Zinc finger RING-type profile. 509 550 IPR001841 -
Vra6g1490 563 MobiDBLite consensus disorder prediction 249 268 - -
Vra6g1490 563 MobiDBLite consensus disorder prediction 102 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1490 Vra-Chr6 29625368 29632143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1490 403 553 C3H Transcription Factor Family AT2G15530 47.712 6.51e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1490 - - var:108336181 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1490 6 29625368 29632143 Vra5g1113 5 17571500 17576173 PCT