Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1484 ATGGCTGTGGAACTCATGGGGTTCCCCAAAATCGATGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGCATGGAACACCTGATCCGAATCCTCTCTCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATTTCCCTCCTCAACCGAACCGGCCACGCCCGCTTCAGACGTGCTCCGCTTCAGGTTAACCCCCCTGAACCGGTTCAAACCCCCGAGCCTCTTCAAACCCTCGCACCGGCTCACAATCCTCCCTCTGCACCGCTCCATCTTCCTCCCCCGCAAACCGCCAACCTCTCTCTGCCGGCGCTCTTCGCGTCGCCGGCGCCGGTTCACCATGCCTCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCCGGAACTCCAAGGCGAAGTCCGTGGAACTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGATCTTTCTCGCCCCGCCGCCTCCGCCTCCCGCGACCTCCGCCGGGAAACCGCCGGCGTTCAAGAAACGCTGCCTCGAACACCGCGAACACTCCGACGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAGACTGTGAGAGTGCCGGCGATAAGTTCAAAGATCGCCGATATTCCACCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGCTCACCGTACCCTCGGGGGTATTACAAGTGCAGCACGGTGAGAGGGTGTCCTGCAAGGAAACACGTGGAGCGTGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTGTTCGAGTCAACGTAG 987 0.6028 MAVELMGFPKIDDQKAIQEAASEGLKGMEHLIRILSHQPSHLNTDLTDVTVSKFKKLISLLNRTGHARFRRAPLQVNPPEPVQTPEPLQTLAPAHNPPSAPLHLPPPQTANLSLPALFASPAPVHHASGSVTLDFTKPHNALRNSKAKSVELEFSKETFSVSSNSSFMSSAITGDGSVSNGKIFLAPPPPPPATSAGKPPAFKKRCLEHREHSDDVSGSGKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHAVQAAMQENAAGVVGLVFEST* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1484 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 326 IPR044810 GO:0003700
Vra6g1484 328 MobiDBLite consensus disorder prediction 75 98 - -
Vra6g1484 328 Gene3D WRKY domain 236 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g1484 328 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1484 328 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1484 328 PANTHER WRKY PROTEIN 12 326 - -
Vra6g1484 328 Pfam WRKY DNA -binding domain 251 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g1484 328 Pfam Plant zinc cluster domain 203 247 IPR018872 -
Vra6g1484 328 MobiDBLite consensus disorder prediction 78 98 - -
Vra6g1484 328 SUPERFAMILY WRKY DNA-binding domain 247 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1484 Vra-Chr6 29446045 29448470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1484 1 327 WRKY Transcription Factor Family AT2G24570 60.172 4.76e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g1484 WRKY 8.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1484 - - gmx:100127381 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1484 6 29446045 29448470 Vra6g1484 6 29446045 29448470 ECH
Vra9g0317 9 2555387 2556935 Vra6g1484 6 29446045 29448470 ECH