Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1470 ATGGTATGCGGGAGTTGTTTAAGGTCTTTTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCGGGTAGTTAGTGGTTTTTCTTCGAATAGTGAATACAAGACAATTACAGGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATATGATGCCGGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGGTGGAAATGTGAAGATGGAAGGCTTAGCTGTGGGTATTCAAGTTTTAGGGGGAAGAGAGCAACAATGGAAGATTTTTATGATATCAAGACATTGAAGATTGGTGACCAATCAGTATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGAGCATCTCTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGACGCTAACTTTCTGGATGCCGAAAAGGACACTTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTCTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGATTCTAGGACCATAATATCAAAAGCTGGTAAAGCAATTGCTCTCTCCGAGGATCATAAGCCAAATAGAAGTGATGAAAGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTAGGAGGGGTTCTAGCAATGTCTCGGGCCTTTGGAAATCGTATGTTGAAGCAGTTTGTTGTAGCAGAACCTGAGATCCAGGACCAGCAGATGGATGAACAAATTGAACTTCTTATTCTTGCAAGTGATGGACTCTGGGATGTGGTACAGAATGATGATGCTGTTTCTCTTGCCCGCACAGAAGAGGAGCCTGAGGCAGCTGCTCGGAAGTTGACAGAAGCAGCATTTTCCCGTGGGAGTGCTGATAACATTACATGCATTGTGGTGCGCTTCCATCATGACAAAAAGGACATAGCTAAACCTGACAAAGCAGAATCAGCTAGTGTTCAGCGTGAGTAG 1068 0.4382 MVCGSCLRSFLVVQAGTFANRVRINGFGRSLRVVSGFSSNSEYKTITGMMVDTGSMSRAGPLVDMMPEKDDDGRFASGGWKCEDGRLSCGYSSFRGKRATMEDFYDIKTLKIGDQSVCLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDAEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQQMDEQIELLILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHDKKDIAKPDKAESASVQRE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1470 355 Gene3D - 79 355 IPR036457 -
Vra6g1470 355 PANTHER ALPHABET, ISOFORM E-RELATED 41 344 - -
Vra6g1470 355 SMART PP2C_4 78 332 IPR001932 -
Vra6g1470 355 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Vra6g1470 355 SUPERFAMILY PP2C-like 85 336 IPR036457 -
Vra6g1470 355 SMART PP2C_SIG_2 70 334 IPR001932 -
Vra6g1470 355 ProSiteProfiles PPM-type phosphatase domain profile. 88 334 IPR001932 -
Vra6g1470 355 CDD PP2Cc 88 334 IPR001932 -
Vra6g1470 355 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 41 344 - -
Vra6g1470 355 Pfam Protein phosphatase 2C 90 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1470 Vra-Chr6 29159814 29176882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1470 1 343 PP2C-type Phosphatase Gene Family AT5G53140 69.832 2.76e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1470 K17506 - gmx:100805795 629.017