Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1469 ATGGACAGTGACCGGAGCGTGTCTGCTCCATCTCATGGGCAAGTTGACGGCACTCAGAGAGTTAAAGCATTACATGGGAGGACTACCGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACTAGAGGAGGATGACATCTTACGGAAGGCAGTTGAGAAATTTAAGGGAAAGAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGGACTGATGTGCAATGCCTGCATAGGTGGCAAAAGGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAGATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCACGACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATTTGGAAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGACATCTGGTGTCCTTAATCAGTTTGAGCCTGTACTTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAGTGTAGTGGAGATGGTAACTGTTCCAAAGGGATTGAAAGAGAAGAGGTTTCGGAGTCTAGCCAAGGTTCAGCTAATGCTGTTTGCAATACTGAATTACAAACTAGAGAGGCGACCTGTAGGCCAAATGAAGAATGTAATCTTCGAAAGGATCATAGTCCAAGTCAAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTAGTATATGCATTCCTGAAATTTCTCACCAAGAGGTATGCACTTCTCAGTTCATTGAGCAACAATCACGTGAACTGGGAAATTCCATAACTGGGGATTGTCATATCAATTTACATTCATTACCCAATGTTTCATCAATGGTCGTGGGGCAGGATTCCTCGCAGTTGCATAGAGATTGTGTAGCTTCTAGTGAAATCTGTGACATGGTGAATGTTCCATTTCGGCCTTCAGAGGCGTTGGGTGCTTCAACTTCCATGGTGCCTGCATCTATAGGTTCTCTTAAACCAGAGCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTGTTTTCAGATTCAATAAATGATGGGTGTTTTCCTCCTGTAGATTATATTAAAGGTGAAGAAACAGTTAAATTTTCTGGATGTACTTCTTTTCGTTGCCAATCTTGTAATTTCCAGATATCTGAAACTGGTGGATCCTCAACTCCTCAGCTAACTTGTCCTCGGTGTTCTAATAATTATCAAGGAACTTCGTCCTCCCTGTCAAATCCTCCAGTACTTTCTGCATGTGATGATAGGGAGGGGCCATCTGTGAATGACAATCATTTATATGGGGCACACGGTCAGCAGTTGGTCTCCACAGCACCTGCTAACCTCACTTATGTCAATTACATATCCAGTTCTCCCTGTGTGGATGGTATGGGTACTGTAGTAATGGAAGAACCACGTGACCAAAACACAAATGTGCATACAGAAAAGGAGGACTCAGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGAATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTTAAGTTGTGGGACTCACCCTCTCATGGTGATAGTCCAGATGCACTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGGCACCGAGATTTGTTGTCACCGCTCTCAGATAAAAGAGTTGAAAAGAAACTTGAGACTGACATGACTACCTTCACCAAAAACATTTGCAGTTTGGATGTCATGTTCGATGATAATGAGACTCAGGAAACGGATATCCCTTCATTGCAAAAACAGAACAGCAGTGCATGTGTTGATGATGATAATAAAGAAAATTGCGGACAAGCTTATAAGCCAACTGAGTATGGAACTTTCGATGAAAAGAACTCCCATAAAGATACTGTAGACAATTCTCAGCCTAATGTGAAGCAACAGCGGCTAAGGGTTGATGCGTCAGCTGCTGCCACTGAACAAGAACCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACTTGACGCTGTCTCCTGATCAAGTTGGTTTAAAATCAAACAGAGGTCTTGGTACAAGTACTAAAACACCCAAAAGCATGAACAGAACCTTGGAAGAAGTTCCAAATCAGAACGGCCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGGATTAATTCTAATTCTCCTTGTGTTCGAGCAAAGGAGCATGAAAAACTTTCTGTTGCTGTTACTCGTGTACAAGCTCCAGTGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCCGCATGGAAATCTCCTTGGTTCTTCAACGCTTTTCTATCTAGCCCCAGACTTGATACCGAACTTACAGTTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTAAAACAGATCAGTGAACATACTGCTGCTACATATGCCAATGCTCAAGAGATTTTGGTAAATGAAACTCCCAAGGCATTACAGAAAGATAACTACCAAGGTTCTCCCAATCAGCCTGGGAACCATTCTCAATTGGCTTCAAATGCATTGATAGAGCGGCGTACACTTGACTTTAGCGAATGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTCCAAAAGCCCTTCTTCGTATCTGTTGAAAGGTTGTAGATGA 2958 0.4121 MDSDRSVSAPSHGQVDGTQRVKALHGRTTGPTRRSTKGQWTLEEDDILRKAVEKFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVNKNGAKKWSSLARHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGVLNQFEPVLHVGNSNQSTRLQCSGDGNCSKGIEREEVSESSQGSANAVCNTELQTREATCRPNEECNLRKDHSPSQASCSEPYYVSIDDVSICIPEISHQEVCTSQFIEQQSRELGNSITGDCHINLHSLPNVSSMVVGQDSSQLHRDCVASSEICDMVNVPFRPSEALGASTSMVPASIGSLKPEHVLISDDECCRVLFSDSINDGCFPPVDYIKGEETVKFSGCTSFRCQSCNFQISETGGSSTPQLTCPRCSNNYQGTSSSLSNPPVLSACDDREGPSVNDNHLYGAHGQQLVSTAPANLTYVNYISSSPCVDGMGTVVMEEPRDQNTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVEKKLETDMTTFTKNICSLDVMFDDNETQETDIPSLQKQNSSACVDDDNKENCGQAYKPTEYGTFDEKNSHKDTVDNSQPNVKQQRLRVDASAAATEQEPSGVLVEHDVNDLTLSPDQVGLKSNRGLGTSTKTPKSMNRTLEEVPNQNGHLKLSSKNPCSRINSNSPCVRAKEHEKLSVAVTRVQAPVDNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNAFLSSPRLDTELTVEDFGYLMSPGDRSYDAIGLLKQISEHTAATYANAQEILVNETPKALQKDNYQGSPNQPGNHSQLASNALIERRTLDFSECGTPSKGDDNKSSAISSKSPSSYLLKGCR* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1469 985 Gene3D - 89 140 - -
Vra6g1469 985 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Vra6g1469 985 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Vra6g1469 985 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Vra6g1469 985 Gene3D - 36 88 - -
Vra6g1469 985 Gene3D - 142 202 - -
Vra6g1469 985 MobiDBLite consensus disorder prediction 1 15 - -
Vra6g1469 985 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Vra6g1469 985 MobiDBLite consensus disorder prediction 694 717 - -
Vra6g1469 985 MobiDBLite consensus disorder prediction 1 38 - -
Vra6g1469 985 MobiDBLite consensus disorder prediction 961 979 - -
Vra6g1469 985 CDD SANT 40 83 IPR001005 -
Vra6g1469 985 PANTHER MYB PROTEIN-RELATED 5 984 - -
Vra6g1469 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Vra6g1469 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Vra6g1469 985 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Vra6g1469 985 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 984 - -
Vra6g1469 985 MobiDBLite consensus disorder prediction 751 770 - -
Vra6g1469 985 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Vra6g1469 985 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Vra6g1469 985 CDD SANT 143 183 IPR001005 -
Vra6g1469 985 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Vra6g1469 985 SUPERFAMILY Homeodomain-like 38 103 IPR009057 -
Vra6g1469 985 SMART sant 36 85 IPR001005 -
Vra6g1469 985 SMART sant 88 137 IPR001005 -
Vra6g1469 985 SMART sant 140 188 IPR001005 -
Vra6g1469 985 MobiDBLite consensus disorder prediction 955 985 - -
Vra6g1469 985 CDD SANT 91 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1469 Vra-Chr6 29117307 29125203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1469 5 985 MYB Transcription Factor Family AT4G32730 41.071 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1469 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1469 - K09420 gmx:100794559 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1469 6 29117307 29125203 Vra6g1469 6 29117307 29125203 ECH