Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1447 ATGATTTTGATGTCAACCTCCTTTGTGTTCATCCTTGCTTCCCTTCATTTTTTGCTTCTCTCTTTCCAAGTGAACTCAGTTTCTATGAATGTCCCATTTGCTTCATCTGAACGAGCTAAAACATTGTTACTTAAACCTTTTAGGCAATCTCTGTCTCAAGGTCCTATTGTGACTCCAAGACCAAAACTTCCTCATTATGACCATCATCACCACAGTGGTAAATCTTATCCTGTGGTTCCATTCCCCTATAAAGACCCAGCTTGTAGCCAAATCTGTACTGATCCATTCACTGCAACTCCTTTTGGTTCACCTTGTGGCTGTATATTTCCCATGAAAGTCAGACTAGTACTGGGTGTAGCTCCTCTGGTTGTTTTTCCAGTCATTACTGAGTTAGAGATTGAAGTTGCATCTGGAACATATTTGAAGCAGAGCCAAGTGAGGATAATAGGTGTCAGTGCTGACAATCAAAATCAGTGGAGAACCATTGTCGATATTGACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCACTTCTGTTATATGAGAGGTTTTGGAACAAAAAAGTTCATTTAAATAGGAGCCTTTTTGGTGATTATGCCACATTGTACGTTGCTTATCCAGGTATTCCATCATCACTGCCACCTGGATATCTAATTGGGAGTAGTCCCCTGCCCAGTAATACCGTTGGTTTCCTCCCAACTACTGCTTCCTTCATGAAAGAGCACGAGAAATTGACTCTTAAAACCATACTCATTATTTCTCTATGTTCTGCTGTACCCTTTTTAGTTTTGGTTGGAGCATTTTTCATTTTGTTGAAATGGTGGAAAGTTAGGAGCTCATCAAGAGCTATCGGCCCTTCACTCACGTCATATCTAAACAAGAGATATGGCTTGGAATCTATGTTGTCAGGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCGCTATTGCTGCTTCTATTCTCTCCGTTAAAACATTTTCCTTTTCCGAGCTTGAGAAAGCAACAGATAAATTCAATTCTCATAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTCTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGAATGGTCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGTAATCTTGTGAAACTCTTTGGAATATGCATAGAAGGGAGAAGGCGTTGCTTGGTTTATGAGCTTGTTTGCAATGGCAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAACTGCCCTCTGGATTGGGAAGCACGGAAAAGAATTGCCATTGGATCTGCAAGAGGTTTGGCCTATCTACACGAGGATTCCAATCCTCGTGTAATTCACCGAGACTTTAAAGCTAGTAACGTGTTGTTAGAAGATGACTTTAACCCTAAGGTTTCTGATTTTGGATTAGCCAGAGAAGCGGGTGAAGGAAATAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTAGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAGCTTATAACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAAGGAGAGGAGAATCTTGTAACGTGGGCTCGACCACTGTTGAGATACAGGGAAGGTTTAGAAAAGCTGGTGGATCCATTTTTGGCTGGAAAGTATGACTTCGATGAGATGGCAAAGATGGCGGCTATTGCTTCCATGTGCGTCCACCCGGAGGTCACTCAAAGGCCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACGACACCAATGAGAGTGAGAAAGACTCTTTGTGCCATGAATCGGATTTTGGAGGTGACCTTGTGTTTTCTGATAGCAGTTGGTTGGATGGTGAAGGGGTAACCCCGAGATTAACTTATGGACCTGAATCTTCCCTCATCACTATGGATTACAGTTCTGGTCTACTAGAAATGGAAAAGGGAACATCAAGCTTGAATGCAGATGAGACATCTTTGCCAATCAGGCACGGAAGTAGATCAGGCCCCTTGAAAACAGCCCGGGGTAAGCCATCCTTTACTAAGCTTACTCGAAGTCGCAGTGATCATGTCGTATCCTTCCAATCTTGTTTGTAA 2187 0.4207 MILMSTSFVFILASLHFLLLSFQVNSVSMNVPFASSERAKTLLLKPFRQSLSQGPIVTPRPKLPHYDHHHHSGKSYPVVPFPYKDPACSQICTDPFTATPFGSPCGCIFPMKVRLVLGVAPLVVFPVITELEIEVASGTYLKQSQVRIIGVSADNQNQWRTIVDIDLVPLGEKFDNTTALLLYERFWNKKVHLNRSLFGDYATLYVAYPGIPSSLPPGYLIGSSPLPSNTVGFLPTTASFMKEHEKLTLKTILIISLCSAVPFLVLVGAFFILLKWWKVRSSSRAIGPSLTSYLNKRYGLESMLSGRIMSSRSMSLVSAIAASILSVKTFSFSELEKATDKFNSHRVLGEGGFGRVYSGTLDDGNEVAVKLLTRNGQNRDREFIAEVEMLSRLHHRNLVKLFGICIEGRRRCLVYELVCNGSVESHLHGDDKKNCPLDWEARKRIAIGSARGLAYLHEDSNPRVIHRDFKASNVLLEDDFNPKVSDFGLAREAGEGNSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELITGRKPVDMSQPQGEENLVTWARPLLRYREGLEKLVDPFLAGKYDFDEMAKMAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTNESEKDSLCHESDFGGDLVFSDSSWLDGEGVTPRLTYGPESSLITMDYSSGLLEMEKGTSSLNADETSLPIRHGSRSGPLKTARGKPSFTKLTRSRSDHVVSFQSCL* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1447 728 MobiDBLite consensus disorder prediction 685 712 - -
Vra6g1447 728 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vra6g1447 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vra6g1447 728 CDD STKc_IRAK 348 617 - -
Vra6g1447 728 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1447 728 PANTHER OS01G0750732 PROTEIN 11 723 - -
Vra6g1447 728 SUPERFAMILY Protein kinase-like (PK-like) 326 616 IPR011009 -
Vra6g1447 728 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Vra6g1447 728 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Vra6g1447 728 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 11 723 - -
Vra6g1447 728 Pfam Protein tyrosine and serine/threonine kinase 345 613 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1447 Vra-Chr6 28476602 28483706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1447 89 715 Receptor kinase-like Gene Family AT5G56890 53.086 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra6g1447 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1447 - - gmx:100790546 1034.63