Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1443 ATGAGTACTGCACAGCAAGAGAAGTTTGTTAGGTTTCGGGATTCCGGTTTGGAGAAGAGTTCTGAGGGCAATTATTCTGAGACTCAAATTTCACAGTCAGGAATATTTAGAACTACATTAAGTTCAGTTTCGGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGATAGGATGAAAAGATTCAGAACATCATTCAAATCTTTTTCCTTTAGCAGTGTTCTTTCTAAAAGCTCTAGTTCTAGAAAGGAAATACTTGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTATTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTCATTGATGATGAGAAAAAATGTCTTTCACTGGACATTAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAGTCCACATGATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAAATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGGATCATTCCATTATATAGAGAAGTTACAAGGGCCTCTGGCATTCTCACTGAAACCGCTTGGGCTGGAGCTGTATTTAATCTCTTTCTTTACATGCTTGCAAGTCACGTTGCTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGTTGGCAAGAAGCCTGTCGAAGTAATACAACAGTGTGTAACAAGGCAGATATGTATTGCAATGATTATTGGGGTGGGTTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATTCACAATGAAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACGAGTACCTATGTTTGGGAAATATGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTGTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGAGATGCAGAACAGTGGATGGCTCACCGATTACTTCCCGACGGCCTGCGAGTGCGAATCAGACGATATGAACAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGCAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGACATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTGAAGCCGGTGCTGTTCACCGAAGAAAGCTACATTGTGAGGGAAGGAGACCCAGTTGATGAGATGCTGTTCGTAATGCGTGGTAAGTTATTGACCATAACAACCAACGGTGGAAGAACTGGTTTCTTCAATTCTGAGTATCTCAAAGCTGGTGACTTTTGTGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTCATTCCTCATCCAGCCTTCCCACTTCAACAAGAACTGTTCAAACTCTTTCAGAAGTGGAAGCCTTTGCCCTCAAAGCTGATGACTTGAAGTTTGTGGCATCACAGTTTCGGCGACTTCACAGCAAGCAGCTGCGCCACACTTTCCGGTTCTACTCGCAACAATGGCGCACCTGGGCGGCGTGCTTCATTCAAGCTGCGTGGCGGCGCTATAGTAAGAGGAAGCTTGAAGAATCCCTGGTTGAAGAAGAGGAGAATAGACTGCAAAATGTGTTGGCTAAATCAGGTGGAAGCTCACCAAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTACATTGCTTCGCCGTAATGGTGCAAAGAAGGGTAGGCTGCCTGAGAGATTACCCCCTATGCTCCTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGACGAATAG 2160 0.419 MSTAQQEKFVRFRDSGLEKSSEGNYSETQISQSGIFRTTLSSVSEKFQNGLESGSDRMKRFRTSFKSFSFSSVLSKSSSSRKEILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDIKMEITATVLRSFSDAFYIVHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYREVTRASGILTETAWAGAVFNLFLYMLASHVAGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGLSKISTFLNTSCPIHNEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSSLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVEEEENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRLPERLPPMLLQKPAEPDFTADDE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1443 719 MobiDBLite consensus disorder prediction 694 719 - -
Vra6g1443 719 Gene3D Helix hairpin bin 415 480 - -
Vra6g1443 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 717 - -
Vra6g1443 719 Coils Coil 642 662 - -
Vra6g1443 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 717 - -
Vra6g1443 719 SMART cnmp_10 489 620 IPR000595 -
Vra6g1443 719 Pfam Cyclic nucleotide-binding domain 510 600 IPR000595 -
Vra6g1443 719 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Vra6g1443 719 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Vra6g1443 719 Gene3D Jelly Rolls 487 607 IPR014710 -
Vra6g1443 719 Gene3D - 95 413 - -
Vra6g1443 719 SUPERFAMILY Voltage-gated potassium channels 86 411 - -
Vra6g1443 719 CDD CAP_ED 489 620 IPR000595 -
Vra6g1443 719 Pfam Ion transport protein 94 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra6g1443 719 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1443 Vra-Chr6 28366624 28373582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1443 5 718 Ion Channels AT5G53130 77.266 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1443 K05391 - gmx:100801032 1273.84