Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1437 ATGGCAAAGAAGACCATGAAGAAGACCAAGGGTCGTAAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGAGTGACGTTCTCCAAGCGTCGAACTGGGATTTTCAAGAAAGCCAGCGAACTTGCTACCCTCTGTGGTGTGAACATTGCTGTCATCATGTTTTCACCGAGTAACCAGGTTTTCTCCTTCAGAAGCCCTGATGTGGATCTTGTTATCCAATGCTACATGGCGCAAGGTCCACCTCCGCTCCTCACGCTAGACTTGAACAAGGCTAACAACACCGTGGATGAGGGAGAACTCCATGCACAACTCAACAACTTGTCCGACCAGATGGCGGCGGAGAAGAAGCATGAAGAGGCTCTGAAACGTCTGATGAAGGATGTGGAGGAACACTCGTGGTGGGCCATGCCGATGGATAGCATGAACGATGCGCAGCTAGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAATGTGTGAATGAAAAACGTGAGAAGCTCCTCCTTCAGACCACTTTTTCTTAA 534 0.4794 MAKKTMKKTKGRKKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVNIAVIMFSPSNQVFSFRSPDVDLVIQCYMAQGPPPLLTLDLNKANNTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAMPMDSMNDAQLEKYKKMLEDLKECVNEKREKLLLQTTFS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1437 177 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 SUPERFAMILY SRF-like 11 89 IPR036879 GO:0003677|GO:0046983
Vra6g1437 177 PANTHER MADS BOX PROTEIN 10 166 - -
Vra6g1437 177 Gene3D - 22 84 IPR036879 GO:0003677|GO:0046983
Vra6g1437 177 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Vra6g1437 177 Coils Coil 149 173 - -
Vra6g1437 177 ProSiteProfiles PARP alpha-helical domain profile. 100 177 IPR004102 GO:0003950
Vra6g1437 177 Coils Coil 107 127 - -
Vra6g1437 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 10 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1437 Vra-Chr6 28282605 28283138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1437 6 163 Type I MADS-box Gene Family AT5G60440 43.902 1.13e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra6g1437 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1437 - - gmx:100805200 216.468