Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1435 ATGGATTCCAAGAACATGGCAAAGAAGACCATGAAGAAGACCAAGGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGGGTGACGTTCTCCAAGCGTCGAACTGGGATTTTCAAGAAAGCCAGCGAACTTGCTACCCTCTGTGGTGTGGACATTGCTGTCATCATGTTTTCACCGAGTAACCAGGTTTTCTCCTTCGGAAGCCCTAATGTGGATCCTGTTATCCAACGCTACACAGCGCAAGGTCCACCTCCGCTCCTCACGCTAGACCTGAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTCCATGCGCAACTCAACAACTTGTCCGACCAGATGGCGGCGGAGAAGAAGCATGAAGAGGCTCTGAAACGTCTGATGAAGGATGTGGAGGAACACTCGTGGTGGGCCATGCCGATGGATAGCATGAACGATGCGCAGCTAGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAATGTGTGAATGAAAAACGTGAGAAGCTCCTCCTTCAGACCACTTTTTCTTACAACTCACCGACTCAGTTTCTCACAGGTGGAAACAACTCCTTTTCCAATGTTGATAACTCTGAAACTATACATACGCCATTGTCGTTGTAG 639 0.4867 MDSKNMAKKTMKKTKGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAMPMDSMNDAQLEKYKKMLEDLKECVNEKREKLLLQTTFSYNSPTQFLTGGNNSFSNVDNSETIHTPLSL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1435 212 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Vra6g1435 212 PANTHER MADS BOX PROTEIN 14 197 - -
Vra6g1435 212 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 Coils Coil 154 178 - -
Vra6g1435 212 ProSiteProfiles PARP alpha-helical domain profile. 105 212 IPR004102 GO:0003950
Vra6g1435 212 CDD MADS_MEF2_like 16 83 IPR033896 GO:0000977|GO:0045944
Vra6g1435 212 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 14 197 - -
Vra6g1435 212 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 Coils Coil 112 132 - -
Vra6g1435 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Vra6g1435 212 MobiDBLite consensus disorder prediction 193 212 - -
Vra6g1435 212 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1435 Vra-Chr6 28265221 28265859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1435 11 212 Type I MADS-box Gene Family AT5G60440 40.097 2.70e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra6g1435 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1435 - - ccaj:109815930 241.506