Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1432 ATGATGCTCCGAGTAGTTGCCGCTGGGAGAATGACTTCCTCTGAAAGCTTGCGAAGTGTTGAAGAAGATGATTCTACAGCTAAGAAAAAGCGCGACTTGTTCTACGATGTTTATGGACCCGAAGGCAAGGCAGAGGTTGTTTTCAAGTCACCAGAAGATAATTCAGTTCTTGATCTAAAGGATATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGGTTTTTATCAAGAATAAACCCCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCCTTGTTCTTATCCTTGTCTAAAATGCTTCATAATTTAAAGAAAATCTGTGGTAAACCAAGGCCTGTCCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAATAGACCTGCTCTGACATCACATCAAGAAGAAGGTTCTCATGCTACAGACAGTCTAACGTTTACAGAGCTTACGAAAGACATACCTTTCCCTGTTACATACTATACACTAACTGAGAAAGAACTGGAAGAGAATGGATATTCTCTTAATCAGCCAGGTTTTCTTTCTACTTTGCCTGCACCTCCAGGATCTCCTTTTCATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAATGAAGGTTTTGAGCTGACAAGAATTAGTCTAGTGGACATCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCATTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAACTGTTCCTAAAGTTTGTTTACGAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAAATATCCCATGATGTGATCATAGACACGGCAGTGTTGTACAGACACCCCCGAGGAACATCTCATAAAAAAGCTCTACGGTTTCTTGCTAAGAAATTTCTAGCAAGGGAGATACAACAATCAGCGAATGGACATGACAGCATCGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTACAAGGAAAAAGTTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCGTCATTGATTGATGACATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACACTCATACCTAAAGAAGCAAGCTGAAGATTCTGATAGTTTGAATGAAAGACTTGCCGAGATGATGGCATTGCAAACGTGCCAGAATAATTCTGCTAAACAGAAAGGCTTCAAATTGAAAGCACCTGCTGAACTGAAGGAAATTATGGCTCGCATGGATGCTAGAATTTATAATCTCTATTTGTCATTACCCACAAATGCTATGATGATAATTTTTACTGGTCACGGAGACACTGCCATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGAATGAAAGTAATTTATGTCGTGAGAAGATTGTAGAAATTTTGGCAGAATTTCAGGCCCAAGCAGAAGTGGCATTGTGTTTTGTAGGCGTCAAGCATTGA 1725 0.4099 MMLRVVAAGRMTSSESLRSVEEDDSTAKKKRDLFYDVYGPEGKAEVVFKSPEDNSVLDLKDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLHNLKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENRPALTSHQEEGSHATDSLTFTELTKDIPFPVTYYTLTEKELEENGYSLNQPGFLSTLPAPPGSPFHEMLALDCEMCITNEGFELTRISLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLDGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHDVIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSANGHDSIEDARATLELALLKIRNGPDFGSPPSFTRKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKQAEDSDSLNERLAEMMALQTCQNNSAKQKGFKLKAPAELKEIMARMDARIYNLYLSLPTNAMMIIFTGHGDTAIVRRLRRMLAEQNESNLCREKIVEILAEFQAQAEVALCFVGVKH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1432 574 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 21 558 - -
Vra6g1432 574 Coils Coil 455 475 - -
Vra6g1432 574 SMART exoiiiendus 218 377 IPR013520 -
Vra6g1432 574 Pfam Exonuclease 221 367 IPR013520 -
Vra6g1432 574 Gene3D - 216 377 IPR036397 GO:0003676
Vra6g1432 574 PANTHER LD29573P 21 558 - -
Vra6g1432 574 SUPERFAMILY Ribonuclease H-like 219 372 IPR012337 -
Vra6g1432 574 CDD REX1_like 220 369 IPR034922 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1432 219 367 C2H2 Transcription Factor Family AT3G27970 26.946 9.87e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1432 K14570 - gmx:100802793 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1432 6 28179192 28187775 Vra6g1432 6 28179192 28187775 ECH