Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1430 ATGGCCATGGAAAATTCTCCTTCAGCTGCTGAGAACATGCCCAATTATCGTGTTAATCACTGGAGGCAAGATGAGGATCAAAAGCTAACCCAACTTGTTCAAGAACATGGTCCTCAAGACTGGAATGCAATTGCTCAACATATACAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTGGTGTTAACAGAAACTGTTTTACGAAAGAAGAAGAAGAGAGGCTGATTGCAGCTCGAGAGATTTATGGAGCAAAATGGGCAACCATAGCCAAACTCTTCGAGGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGCCAACAATGGAAGTTTGCAAGACCTGACCAACCGTTCAACTTCTTCCTCTTCTCACCATCACACATTGTTTCATCACATGATGAACTTCAACGCTACACAAAGGGCACTTGCACCACTGTCTCCTTTGAACTTTGGATCAGTGCCATCCTTCTCAGACTCTTTTCCTTTTGGGCTGTTGAATCCTGCTGCTTCTTCTGCCGGAATCATGAAAAAGGGCTTGTTTCATAGCTCATCATCGCCATTCACTGAGTTTAATAAGGCTTCTTCTTCTTCGGACAGAAAGGAACCACATGACGCTGGATTCAAGGATGTTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGAGTGA 720 0.4417 MAMENSPSAAENMPNYRVNHWRQDEDQKLTQLVQEHGPQDWNAIAQHIQGRTGKSCRLRWRNHLDPGVNRNCFTKEEEERLIAAREIYGAKWATIAKLFEGRTDNALKNHWHVLIARKRKEANNGSLQDLTNRSTSSSSHHHTLFHHMMNFNATQRALAPLSPLNFGSVPSFSDSFPFGLLNPAASSAGIMKKGLFHSSSSPFTEFNKASSSSDRKEPHDAGFKDVTFYDFLGVGADDE* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1430 239 CDD SANT 21 64 IPR001005 -
Vra6g1430 239 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vra6g1430 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Vra6g1430 239 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Vra6g1430 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Vra6g1430 239 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Vra6g1430 239 PANTHER MYB PROTEIN-RELATED 19 137 - -
Vra6g1430 239 MobiDBLite consensus disorder prediction 201 221 - -
Vra6g1430 239 Gene3D - 71 144 - -
Vra6g1430 239 CDD SANT 73 115 IPR001005 -
Vra6g1430 239 PANTHER OS08G0435700 PROTEIN 19 137 - -
Vra6g1430 239 SMART sant 17 66 IPR001005 -
Vra6g1430 239 SMART sant 69 117 IPR001005 -
Vra6g1430 239 Gene3D - 19 69 - -
Vra6g1430 239 Pfam Myb-like DNA-binding domain 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1430 Vra-Chr6 28139154 28140973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1430 1 235 MYB Transcription Factor Family AT4G33450 37.692 6.67e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1430 Myb_DNA-bind_6 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1430 K09422 - gmx:102660725 216.853