Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1418 ATGCAGAAGCAGCTGACCAGACTGACCGTGGTGTTACTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGCCAGGCTGCCCGAACTCCTGCGGAATTGTTTCTTCGATTCCGTATCCATTCGGCATCGGCTATTCTTCCGTCACCGGTGAAAACTGTTTTCTGGAGAACGAATTGAATCTCACATGCACAAACTCAATCTTATATCGCGGTAGAGGTAACGTCCAAATTCTGAACATAAGCCTCGACGGTAAAATCGACATGCTCAGCTACATATCCCCAGTCTGCAAAAACGAATCGTTAGGTGCAGAAGCAACATACGGCATCGATACCAGTCTCAGAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTGAGCGTAGGCTGCGACACCTACGGCTATCTCAACAGTTTCCGCAACGGCACACAATCTTCAACGGGGTGCTTGACCAGATGCGACACCTTAGAGAGCGTTAAAAGCATGCAGAGAAGTGGAAACTGCACGGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGGATGAACAGCATCACTTTTCAAGCTTTCACCTTCAACAATTTCAATTCGACTTCCGATTTCAACAAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCTGTCGATCATTTAAGCGGCGTCCCGTTCGATATGACACCTCTGGTCATGGATTGGAGCGTTGGAAACGACACCTGCAAAGCTTCCATGCTCAGAGCAGATTATGCATGCAAGAGTCCTTATGGCGAGTGTGAGAACTCCCCGTTTGATTATGGTTACCGATGCAAATGTAAACCTGGGTTTCAGGGAAACGCCTACCTTCTCGATGGCTGCCAAGACTTTCATGAGTGTAGTAATAACAAACACAATTGCGACAGTGAAGATCATTGTCGTGAAACTTTGGGCTCTTTTGAATGTTTCTGTCCTGACGGACTTATCGGAAATGGGACAAAAGAAGGCGGAGGATGCCACCCAAGGCAGACGGCCAATGCTTTTACCAAGATCGTCATCGGCGCAGGTGTAGGATTAGTTGCACTGTTCATAGGGGTTTCTTGGTTATACTTAGTGTACCAGAAAAGGAAAGTCTTGAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGCATCATTCTGAGACAACAACTGTCCAAAAAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGCACAGTTTTCAAAGGAGTCCTCTCAAACAACAAAGTTGTAGCTATCAAAAAGTCCAAGATAGTGGATCAGAACCAGGTGGAACAATTCATCAATGAGGTCATTATACTGTCACAGATTAATCACAGGAATGTGGTCAAGCTCTTGGGATGTTGTCTGGAGACAGAAGTTCCTTTGTTAGTCTATGAATTTGTTAACAATGGCACCCTTTATGATTATTTGCATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACAGCCAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCGGAGTACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGAGAAAAGAAGTCTTACAGTTCACTTTCTATGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTCTTCAGGTAGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCCAGATGCCTGAGACTTACAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGACAATGGAATTAGAAGGAATAAAGCTTACAGAAAAACACCCTTGGATCAATACAGGAAAGAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGGACAAAACTCTTATGAACATGGTGATAGTAGTAGTGTCCAACCGAATACTGGATATGATAGCTTGAGAGAACTTGAACTAATTGACTTTGGTAATGGAAGATGA 2250 0.4436 MQKQLTRLTVVLLMAVAAASQALPGCPNSCGIVSSIPYPFGIGYSSVTGENCFLENELNLTCTNSILYRGRGNVQILNISLDGKIDMLSYISPVCKNESLGAEATYGIDTSLRTPAFAISSEDNKFVSVGCDTYGYLNSFRNGTQSSTGCLTRCDTLESVKSMQRSGNCTGIGCCQVDIPPGMNSITFQAFTFNNFNSTSDFNKCGYSFVVKNGNYTFSVDHLSGVPFDMTPLVMDWSVGNDTCKASMLRADYACKSPYGECENSPFDYGYRCKCKPGFQGNAYLLDGCQDFHECSNNKHNCDSEDHCRETLGSFECFCPDGLIGNGTKEGGGCHPRQTANAFTKIVIGAGVGLVALFIGVSWLYLVYQKRKVLKLKQKFFQQNGGIILRQQLSKKEDSSQTTTIFSAEQLKKATNNFDESLIIGKGGYGTVFKGVLSNNKVVAIKKSKIVDQNQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEEKRSLTVHFLCSLKEDRLFDVLQVGLLDEENQQEIMQVAILAARCLRLTGEERPSMKEVTMELEGIKLTEKHPWINTGKNFEESEYLLYEGQNSYEHGDSSSVQPNTGYDSLRELELIDFGNGR* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1418 749 SMART egf_5 294 335 IPR000742 -
Vra6g1418 749 SMART egf_5 243 290 IPR000742 -
Vra6g1418 749 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Vra6g1418 749 SUPERFAMILY EGF/Laminin 294 328 - -
Vra6g1418 749 CDD STKc_IRAK 424 691 - -
Vra6g1418 749 Gene3D Laminin 241 333 - -
Vra6g1418 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 11 718 - -
Vra6g1418 749 Gene3D Transferase(Phosphotransferase) domain 1 494 709 - -
Vra6g1418 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vra6g1418 749 Pfam EGF domain 295 328 IPR024731 -
Vra6g1418 749 Gene3D Phosphorylase Kinase; domain 1 383 493 - -
Vra6g1418 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 11 718 IPR045274 GO:0007166
Vra6g1418 749 ProSiteProfiles Protein kinase domain profile. 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1418 749 SMART serkin_6 418 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1418 749 Pfam Protein kinase domain 422 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1418 749 SUPERFAMILY Protein kinase-like (PK-like) 399 689 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1418 Vra-Chr6 27942567 27945840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1418 8 749 Receptor kinase-like Gene Family AT1G21230 43.725 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra6g1418 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1418 - - gmx:100819535 1121.3