Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1417 ATGGCAAGAATGAGACTGAAGGAGATGCAGAAGCAACTGACCCGACTGACCGTGGTGTTACTGATGGCTTTAGAAGCCACCAGCCAAGCCCTGCCCGGCTGCCCGCACTCACTGCCCGGCTGCCCGTGCTCATGCGGAAATGTTTCACCGATTCCGTATCCGTTCGGCATCGGCAATTCAAAGCTCACCGGTAAAAACTGTTTTCTGGAGGAAGCATTGAATCTCACATGCACAAACTCTACCTTATATCGCGGTAAAGGTAACGTCCAAATTCTGAACATAAGCCTCGCCGGTAAAATGGACGTGCTCATGCAAATCTCCGAGGTCTGCAAAAACGAATCGTTAGGTAGAGAAGAAACATACGGCTACTATATCAGTCTCACAACACCGGCTTTTGCCATTTCTAGTGAGGACAACAAGTTCGTGACCGTAGGCTGCGATACCTACGGCTATCTCAACACTTTCCGGAACGGCACACAATCTTCAACGGGGTGCTTGACCAGATGCGACAGCTTACAGAGCGTTGAAAGCATGCAGAGATATGGAAACTGCACAGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTCGGATGAAGAACATCTCTTTTGAAGCTTCCTCCTTCCACAATTTCAATTCCACTTCCGATTTTAACAAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACCTTTTCTCCGTCGATCATTTAAGGCGCGTCCCGTTCAATATGACACCTCTTGTCATGGATTGGAGCGTCGGAAACGACACGTGCGAAGCTTCCAAGGGCAGACCAGGTTATGCATGCAAGAGTCCTGATAGCGAGTGTGAGAAATCCCCGTCTGAATATGGTTACCGATGCAAATGTAAAAAAGGCTTTCAGGGAAACGCTTACCTTCCCCATGGTTGCCAAGACATTCTTGAGTGTAGTAGTAACAAACACAATTGCGATAGTGAAGATCATTGTCGTGAAACTCCGGGCTCTTTTGAATGTTTCTGTCCTGACGGACTTATCGGAAATGGGAAAAAAGAAAGCGGAGGATGCCACCGAAGGCAGCCGGCCGATGCTTTTAAGAAGATCGTCATCGGCGCAGGTGTAGGATTAATTGCTCTGTTCCTAGGGATTTCTTGGTTGTACTTAATGTACCAGAAAAGGAAAGACATAAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGCATCATTCTGAGACAACAACTCTCTACAGAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGATTTCTCTCCAACAACAAAGTTGTAGCTATCAAAAAGTCCAAGATAGTGGATCAGAACCAGGTGGAACAATTCATCAATGAGGTCATTATACTGTCACAAATTAATCACAGGAATGTGGTCAAACTCTTGGGATGTTGTCTGGAGACAGAAGTTCCTTTATTAGTCTATGAATTTGTTAACAATGGCACCCTTTATGATTATTTGCATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGAAGCTTGCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCAAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCAATTGACCATACTGAGATAACCACAATTGTGCAAGGGACCTTGGGGTATTTAGACCCAGAGTACATGCAATCAAGCCAATTGACAGAAAAGAGTGATGTCTATAGTTTTGGGGTAGTGCTTGTAGAACTGCTTACAGGGGAGAAAGCTTTTTCTTTTTCCAGGGCAGAAGAGCAACGAAGTCTTACAGTTCACTTTCTATGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTATTCAGGTGGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCCAGATGCTTGAGACTTACAGGGGAGGAAAGGCCTAGCATGAAAGAAGTGACAATGGAACTAGAGGGAATAAAGCTTACGAAGAAAGACCCTGGGATCAATACAGACAAAATTTGTAATGAGAGTCAATACTTACTTCGTGAGACACAGAGCTCTTGTGAACATGGTGACACTAGCAGCCAACAAAATACTGAATATGATAGCTTGAGAGAACACGAAGTAATTGATTTCGGTGATGGAAGATGA 2292 0.442 MARMRLKEMQKQLTRLTVVLLMALEATSQALPGCPHSLPGCPCSCGNVSPIPYPFGIGNSKLTGKNCFLEEALNLTCTNSTLYRGKGNVQILNISLAGKMDVLMQISEVCKNESLGREETYGYYISLTTPAFAISSEDNKFVTVGCDTYGYLNTFRNGTQSSTGCLTRCDSLQSVESMQRYGNCTGIGCCQVDIPPRMKNISFEASSFHNFNSTSDFNKCGYSFVVKNGNYLFSVDHLRRVPFNMTPLVMDWSVGNDTCEASKGRPGYACKSPDSECEKSPSEYGYRCKCKKGFQGNAYLPHGCQDILECSSNKHNCDSEDHCRETPGSFECFCPDGLIGNGKKESGGCHRRQPADAFKKIVIGAGVGLIALFLGISWLYLMYQKRKDIKLKQKFFQQNGGIILRQQLSTEEDSSQTTTIFSAEQLKKATNNFDESLIIGKGGYGTVFKGFLSNNKVVAIKKSKIVDQNQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSEACIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPIDHTEITTIVQGTLGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKAFSFSRAEEQRSLTVHFLCSLKEDRLFDVIQVGLLDEENQQEIMQVAILAARCLRLTGEERPSMKEVTMELEGIKLTKKDPGINTDKICNESQYLLRETQSSCEHGDTSSQQNTEYDSLREHEVIDFGDGR* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1417 763 Gene3D Phosphorylase Kinase; domain 1 399 508 - -
Vra6g1417 763 ProSiteProfiles EGF-like domain profile. 306 341 IPR000742 -
Vra6g1417 763 SUPERFAMILY EGF/Laminin 309 342 - -
Vra6g1417 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Vra6g1417 763 MobiDBLite consensus disorder prediction 748 763 - -
Vra6g1417 763 MobiDBLite consensus disorder prediction 732 747 - -
Vra6g1417 763 Gene3D Transferase(Phosphotransferase) domain 1 509 725 - -
Vra6g1417 763 CDD STKc_IRAK 439 706 - -
Vra6g1417 763 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 726 - -
Vra6g1417 763 SMART serkin_6 433 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1417 763 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 726 IPR045274 GO:0007166
Vra6g1417 763 Pfam Protein kinase domain 437 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1417 763 SMART egf_5 309 350 IPR000742 -
Vra6g1417 763 SMART egf_5 258 305 IPR000742 -
Vra6g1417 763 ProSitePatterns Protein kinases ATP-binding region signature. 439 462 IPR017441 GO:0005524
Vra6g1417 763 MobiDBLite consensus disorder prediction 732 763 - -
Vra6g1417 763 SUPERFAMILY Protein kinase-like (PK-like) 413 704 IPR011009 -
Vra6g1417 763 Pfam EGF domain 310 343 IPR024731 -
Vra6g1417 763 Gene3D Laminin 255 349 - -
Vra6g1417 763 ProSiteProfiles Protein kinase domain profile. 433 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1417 Vra-Chr6 27925141 27931254 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1417 19 763 Receptor kinase-like Gene Family AT1G21230 44.532 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra6g1417 Pkinase 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1417 - - gmx:100819535 1097.03