LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1415	ATGAGATTGAAGGAGATGCAGAAGCAGCTGACCAGACTGACCGTGGTGTTACTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGCCAGGCTGCCCGAACTCCTGCGGAATTGTTTCTTCGATTCCGTATCCATTCGGCATCGGCTATTCTTCCGGTAAAAACTGTTTTCTGGAGAACGAATTGAATCTCACATGCACAAACTCAATCTTATATCGCGGTAGAGGTAACGTCCAAATTCTGAACATAAGCCTCGACGGTAAAATCGAGATGCTCAGCTACATATCCCGAGTCTGCAAAAACGAATCCTTAGGTGCAGAAGCAACATACGGCATCGATACCAGTCTCAGAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTGACCGTAGGCTGCGACACCTACGGCTATCTCAACAGTTTCCGCAACGGCACACAATCTTCAACGGGATGCTTGACCAGATGCAACACCTTAGAGAGCGTTGAAAGCATGCAGAGAAGTGGAAACTGCACGGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGGATGAAGAACATCACTTATCGAGCTTTCTCTTTCAACAATTTCAATTCCACTTCCGATTTCAACGAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAGCGGCGTCCGGTTCAATATGACACCTCTTGTCATGGATTGGAGCGTAGGAAGCGACACGTGCGAAGCTTCCATGGTCAGAGCAGATTATGCATGCAAGAGTCCTTATAGCGAGTGTGAGAACTCCCCCTTTGAATATGGTTACCGATGCAAATGTAAACCTGGGTTTCAGGGAAACGCCTACCTTCTCGATGGCTGCCAAGACATTCCGGAGTGTAGTAGTAACAAACACAATTGCGATAGTGAAGATCATTGTCGTGAAACTCCGGGCTCTTTTGAATGTTTCTGTCCTCACGGACTTATCGGAAATGGAACAAAAGAAGGCGGAGGATGTCACCCAACGCAGCCTGCCGATGCTTTTACGAAGATCGTTATCGGTGCCGGTGTAGGGTTAATTGCTCTGTTCATAGTGATTTCTTGGTTGTACTTAATGTACCAAAAAAGGAAAGTCTTGAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGTATCATTCTGAGACAACAACTCTCCGCAAAAGAAGACTCATCTCAAACCACTACAATTTTCAGTGCAGAACAACTTCAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGATTTCTCTCCAACAACAAAGTCGTAGCAATCAAAAAGTCCAAAATAGTGGATCAGAGCCAGGTGGAACAATTCATTAATGAGGTCATTATCCTGTCACAGATTAATCACAGGAATGTGGTCAAACTCTTGGGATGTTGTCTGGAGACAGAAGTTCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTTTGATTATTTACATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCTTCTGCTGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGATACTTACACTGCCAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAATACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGAGAAAAGAAGTCTTACAGTTCACTTTCTATGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTCTTCAGGTCGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCTAGATGCCTGAGACTTACAGGGGAGGAAAGACCTACCATGAAGGAATTGACAATGGAATTAGAAGGAATAAAGCTTACAGAGAAACACCCTTGGACCAATACAGGAAGGAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGCACAAAGCTCTTATGAACATGGTGATAGTAGTAGTGGCCAACAAAGTACTGGATATGATACCTTGAGAGAACTTGAACTAATTGACTTTGGTAATGGAAGATAA	2259	0.4391	MRLKEMQKQLTRLTVVLLMAVAAASQALPGCPNSCGIVSSIPYPFGIGYSSGKNCFLENELNLTCTNSILYRGRGNVQILNISLDGKIEMLSYISRVCKNESLGAEATYGIDTSLRTPAFAISSEDNKFVTVGCDTYGYLNSFRNGTQSSTGCLTRCNTLESVESMQRSGNCTGIGCCQVDIPPGMKNITYRAFSFNNFNSTSDFNECGYSFVVKNGNYTFSVDHLSGVRFNMTPLVMDWSVGSDTCEASMVRADYACKSPYSECENSPFEYGYRCKCKPGFQGNAYLLDGCQDIPECSSNKHNCDSEDHCRETPGSFECFCPHGLIGNGTKEGGGCHPTQPADAFTKIVIGAGVGLIALFIVISWLYLMYQKRKVLKLKQKFFQQNGGIILRQQLSAKEDSSQTTTIFSAEQLQKATNNFDESLIIGKGGYGTVFKGFLSNNKVVAIKKSKIVDQSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHNQGQGVNVSWKTRLRIATEASAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEEKRSLTVHFLCSLKEDRLFDVLQVGLLDEENQQEIMQVAILAARCLRLTGEERPTMKELTMELEGIKLTEKHPWTNTGRNFEESEYLLYEAQSSYEHGDSSSGQQSTGYDTLRELELIDFGNGR*	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1415	752	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	15	721	IPR045274	GO:0007166
	Vra6g1415	752	Gene3D	Phosphorylase Kinase; domain 1	387	496	-	-
	Vra6g1415	752	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	15	721	-	-
	Vra6g1415	752	Gene3D	Laminin	244	336	-	-
	Vra6g1415	752	SUPERFAMILY	Protein kinase-like (PK-like)	403	692	IPR011009	-
	Vra6g1415	752	SMART	egfca_6	294	338	IPR001881	GO:0005509
	Vra6g1415	752	SMART	egfca_6	204	293	IPR001881	GO:0005509
	Vra6g1415	752	Pfam	Protein kinase domain	425	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra6g1415	752	SUPERFAMILY	EGF/Laminin	293	329	-	-
	Vra6g1415	752	Gene3D	Transferase(Phosphotransferase) domain 1	497	714	-	-
	Vra6g1415	752	SMART	egf_5	297	338	IPR000742	-
	Vra6g1415	752	SMART	egf_5	246	293	IPR000742	-
	Vra6g1415	752	SMART	serkin_6	421	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra6g1415	752	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	542	554	IPR008271	GO:0004672\|GO:0006468
	Vra6g1415	752	ProSiteProfiles	Protein kinase domain profile.	421	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra6g1415	752	CDD	STKc_IRAK	427	694	-	-
	Vra6g1415	752	ProSiteProfiles	EGF-like domain profile.	294	332	IPR000742	-
	Vra6g1415	752	Pfam	EGF domain	298	331	IPR024731	-
	Vra6g1415	752	ProSitePatterns	Protein kinases ATP-binding region signature.	427	450	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1415	Vra-Chr6	27865334	27871218	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g1415	13	752	Receptor kinase-like Gene Family	AT1G21230	43.725	0.0	579

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vra6g1415		Pkinase	3.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g1415	-		-	gmx:100819535	1127.46