Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1413 ATGCAAGCTGAGGATGGAACTGGCAATGGTGATAAGTGGGCTGTGTTGGGTAGGAGGTCAGACTCTGAAGATAGAGATTACGGGGGCAGAATTCTAGGTGGAAATAATGTTGCTGGTGAAGAAGGTCGGGGCTTGAAGGATGAAGCTTTAAAGGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCGGGGTTTGAAGAAGGAAGCTGTTGATAGTAGGGTGACGAGTAAAGGTGGGAATGGTATTGCTGAAGGTGAAGAAGTGCGGGTCTTGAAGCCTGAAGCTATAAATAATGGGGTGACGCACGAAGGAGGAAATGGTGTTGCAAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAAATACTGGGTTAACAGTTGTGGGGGGCAATGGTGTTGCTGAAGGTGAAGAAAAAGTTCAGGACTTGAGGAATGAAACTGTAAATAATGGAATGGTACTTGAGGGTGGAAATGGTGTTGCTGAAAGCAAAGAGGTTTTGGCCTCAAAGAAGGAAGTTATAAATAATGGAGTGGCAATTGCTGATGGTAATGTTGTTACTTACAGTGGAGAAGATCTGGGCTCAAAGGATGAAGCTGTAAACAATGAGGTGGCAATTGCAGATGGGAGTGGTGTTACTCCGGTTGAACATGATCGCTTGAAGAATGAAACTGTAGATCATGTAGAAGTACTTACAGATGGATTTGGTGTTGTAGAAGGGAAGTCTGGTGCAGTTGAATGTTTCCGAACATATAAGAGGCGCAAGCATGTAAAATGTGCTTCAGAATTTAAACTTCAGGAAAACAGCAGAAAGCATTTGGAAGTGGAAACTTCTAAAATTGACAATAATGGTCAAGAACGCTCTTTGGATTTAGATTGTTTGCTTTATCGATTACAGAATGAAGCTAATGGGCAAGAAAATGCTGTGCATAATGGATTTTCTACTGAGCCTGATGGCCATGGTGCAACTGAAAGGTGTCAACGATTGTTCTGCGATATCTTAGCCTCTGCGGAGTTCAGTTCATTACGTAAAATACTGCTTGAAAATTTCCAAGAAATGAAACCTGAAACTATATTTGACTTTAGCCTGATAAACTCAAGGATGAAGGAACAAGCTTATGAGCAATCGCCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAGAAGCTTCAAAATACTGGCCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACTTGTCAAAAGCTTCCTTCTGTGAGCGGGTTGTGATTTCAACGCACAGATCCTTCGAAGACGGAAAACAGGTGGAATCAATCTCTCACATGAAGCCAGAGCAGAGACTAGAATGTGTTACATTCAAAATTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGAGCCTGCTGTAGAAGAAATACCCCCCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGCGGTATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGAAACTGGACGACATTGTGGGCAAGGAAGTCATCCCTACAAAAGAGGAAAAACTGAATGAATTGGAGGAGAATTCAATTTGTACTTGTGATGGGATTCCAGTTTCCGCAGGTCCGAGACATCTATCTGTCTGCAAAATTTGTAAAATAGTGGTGCAACGTGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAGTACTACCATGTAAGGTGTTTGTCTAGTAAGCAGCTTAGGACTTACGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTCTGCTTCACTGACAAAGACGACGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATGTACTGTTTGAAACCTCCGCTAAATTTGATTCCTGTGGGAAAATGGTTCTGCATAAAATGTGATGCAGGGATACTAGCAATACACAAGGCAAGAAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCAGAAGGATTTATTAAAGCCAAATGAAGACATTGACAAGAAATGGAACAGAAAACGTGAACGGGAATCTGATAAAGTTGGAGGAATGGAGATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGAAAATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACGTAA 2208 0.418 MQAEDGTGNGDKWAVLGRRSDSEDRDYGGRILGGNNVAGEEGRGLKDEALKDGVVVEGEEVRGLKKEAVDSRVTSKGGNGIAEGEEVRVLKPEAINNGVTHEGGNGVANRKEVWGLKNGTVNTGLTVVGGNGVAEGEEKVQDLRNETVNNGMVLEGGNGVAESKEVLASKKEVINNGVAIADGNVVTYSGEDLGSKDEAVNNEVAIADGSGVTPVEHDRLKNETVDHVEVLTDGFGVVEGKSGAVECFRTYKRRKHVKCASEFKLQENSRKHLEVETSKIDNNGQERSLDLDCLLYRLQNEANGQENAVHNGFSTEPDGHGATERCQRLFCDILASAEFSSLRKILLENFQEMKPETIFDFSLINSRMKEQAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVVISTHRSFEDGKQVESISHMKPEQRLECVTFKIGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPAVEEIPPKSWFCANCTASGIGCQHENCVVCERLNVPKKLDDIVGKEVIPTKEEKLNELEENSICTCDGIPVSAGPRHLSVCKICKIVVQRGKIKICGHLFCPSKYYHVRCLSSKQLRTYGHCWYCPSCICQVCFTDKDDDKIVLCDGCDHAYHMYCLKPPLNLIPVGKWFCIKCDAGILAIHKARKAYESKKGKIGQKDLLKPNEDIDKKWNRKRERESDKVGGMEMLITAANTLNSEEKMNAIQIESERTLT* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1413 735 CDD PHD_RSF1 612 656 - -
Vra6g1413 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 660 IPR013083 -
Vra6g1413 735 SUPERFAMILY FYVE/PHD zinc finger 442 498 IPR011011 -
Vra6g1413 735 SMART PHD_3 614 657 IPR001965 -
Vra6g1413 735 SMART PHD_3 452 498 IPR001965 -
Vra6g1413 735 SMART PHD_3 562 611 IPR001965 -
Vra6g1413 735 Pfam PHD-finger 611 657 IPR019787 -
Vra6g1413 735 Pfam PHD-finger 453 499 IPR019787 -
Vra6g1413 735 MobiDBLite consensus disorder prediction 1 43 - -
Vra6g1413 735 ProSitePatterns Zinc finger PHD-type signature. 453 497 IPR019786 -
Vra6g1413 735 Gene3D - 338 500 - -
Vra6g1413 735 PANTHER HISTONE ACETYLTRANSFERASE 251 721 - -
Vra6g1413 735 SUPERFAMILY FYVE/PHD zinc finger 611 658 IPR011011 -
Vra6g1413 735 ProSiteProfiles Zinc finger PHD-type profile. 609 659 IPR019787 -
Vra6g1413 735 PANTHER D4, ISOFORM A 251 721 - -
Vra6g1413 735 ProSiteProfiles Zinc finger PHD-type profile. 450 500 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1413 Vra-Chr6 27835406 27851581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1413 611 674 C2H2 Transcription Factor Family AT3G01460 51.562 5.20e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra6g1413 PHD 1.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1413 - - gmx:100810450 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1413 6 27835406 27851581 Vra6g1413 6 27835406 27851581 ECH
Vra6g1413 6 27835406 27851581 Vra5g0738 5 12577737 12586858 PCT