Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1411 ATGTCTGCTACTGCTGGTAAAGTCATCAGGTGCAGAGCTGCTGTGGCATGGGAACCAGAGAAGCCATTGTCGATAGAGACCATAGAAGTGGCACCACCTGGGAAAGGAGAAGTTCGTTTGAAAATCCTCTTCAACTCCCTTTGCCGTACTGATGTTTACTGGTGGGATGTTAAGGGTCAGAATCCGCTGTTTCCTCGTATTTTAGGTCATGAAGCTTCAGGGATTGTGGAGAGCGTGGGTGAGGGTGTGACCGATCTGAAACCAGGAGATCATGCACTGCCAATATTCACTGGAGAGTGTGGGGAATGCAAATATTGCAAATCGGAAGAGAGCAACCTGTGTGAGCTGCTAAGGATCAACAGTGACAGAGGAGTTATGCTGAGTGATGGCAAAACAAGGTTCTCCAAAAATGGACAACCCATTTACCACTTTCTGGGAACCTCCACATTCAGTGAATACACTGTTCTTCATGCTGGCTGTGTTGCCAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTGTTGTCAGTTGCGGATTTTGCACAGGTTTTGGTGCTACTGTAAATGTTGCAAAACCAAAGCCTAATGATACTGTTGCTGTCTTTGGTTTGGGAGCTGTTGGTCTTTCTGCCTGTGAAGGAGCAAGGGTTTCTGGTGCATCGAGAATCATTGGGGTTGATTTACTTTCCAGTCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGACTTTGTGAACCCCAAAGAACACAACAAACCAGTTCAACAGGTGATTGCTGAAATGACTGGTGGAGGAGTAGATCGTGCTGTTGAATGCACTGGAAGCATCCAAGCTTCGATCTCAGCATTTGAATGCACTCATGATGGTTGGGGTGTTGCTGTACTTGTTAGTGTTCCACACAAGGATGCTGAATTCAAAACTCATCCCATGAAGTTCATGGAAGGAAGAACTCTGAAGGGTACCTTCTATGGCCACTTCAAACCCCGCACTGATATTCCTGGTGTCGTGGAGAAGTACCTGAACAAGGAGCTGGAACTGGAGAAACTTATCACTCACAGCGTGCCATTCTCAGAGATCAACACGGCATTTGACCTTATGCTGAAAGGAGAGGGAATAAGGTGTCTGATCCGCATGGAAGAGTGA 1143 0.4654 MSATAGKVIRCRAAVAWEPEKPLSIETIEVAPPGKGEVRLKILFNSLCRTDVYWWDVKGQNPLFPRILGHEASGIVESVGEGVTDLKPGDHALPIFTGECGECKYCKSEESNLCELLRINSDRGVMLSDGKTRFSKNGQPIYHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVVSCGFCTGFGATVNVAKPKPNDTVAVFGLGAVGLSACEGARVSGASRIIGVDLLSSRFEQAKKFGVTDFVNPKEHNKPVQQVIAEMTGGGVDRAVECTGSIQASISAFECTHDGWGVAVLVSVPHKDAEFKTHPMKFMEGRTLKGTFYGHFKPRTDIPGVVEKYLNKELELEKLITHSVPFSEINTAFDLMLKGEGIRCLIRMEE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1411 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vra6g1411 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Vra6g1411 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Vra6g1411 380 CDD alcohol_DH_plants 9 377 - -
Vra6g1411 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Vra6g1411 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Vra6g1411 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Vra6g1411 380 Gene3D - 183 321 - -
Vra6g1411 380 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Vra6g1411 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Vra6g1411 380 Gene3D - 20 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1411 Vra-Chr6 27793693 27797341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1411 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.800 1.70e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1411 K18857 - gmx:100775490 703.36