Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1407 ATGGGGAGGGGAAAGATTGAGATCAAGAGGATCGAGAACTCCAGCAACAGACAAGTTACCTACTCCAAGAGAAAGAATGGGATCCTAAAGAAGGCCAAGGAAATCACTGTTCTATGTGATGCACAAGTTTCCCTTATCATCTTTGCTGCATCTGGGAAGATGCATGACTACATCAGCCCTTCCACTACTTTGATTGACATATTGGAGAGGTACCACAAGACCTCAGGGAAGAGGCTTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAAGATATAAACTCTCTGAACTACAAGGAACTCATGGCCTTAGAAGATGCCTTGGAAACTGGTCTCGTCAGTGTTCGTGAGAAACAGATGGATGTGTACAGGATGTTCAGGAGAAATGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCAAGAGAAGTGGAGAACGGGTTTGATCAGAGTGTGAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCAATGCAGCCAAATCTTCAAGAAAGGATCTGA 627 0.453 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVREKQMDVYRMFRRNDKILEEENRELNFLWQQRLAVEGAREVENGFDQSVRDYNSHMPFAFRVQPMQPNLQERI* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1407 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g1407 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Vra6g1407 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g1407 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vra6g1407 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 208 - -
Vra6g1407 208 Coils Coil 77 111 - -
Vra6g1407 208 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Vra6g1407 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra6g1407 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vra6g1407 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1407 Vra-Chr6 27688578 27692729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1407 1 143 MADS-box Gene Family AT5G20240 68.531 3.00e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra6g1407 K-box 9.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1407 K09264 - gmx:100817554 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1407 6 27688578 27692729 Vra6g1407 6 27688578 27692729 ECH
Vra6g1407 6 27688578 27692729 Vra5g0746 5 12728375 12731374 PCT