Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1405 ATGATGGCAAGTGTGTTGCTCCTCCAACGTGATTCTTTATTGATGAAGCTATCGCTAATGCTTATTCTTATCAGAAGTGGCAGCGCTCATAACGAGTGCCACGAGGAAAACTTGTCTTGTGGGCCGAACGAACCCCTTATCAGATTTCCCTTCCAACTCGTAAAGGAGATGAAGGAGCCATGCAGTTATCCCCGTCTTTGTCTTTCTTGTACTGAAAATAATCAGACCATGCTTCTGCTTCCAACGATCAAACTCCAAGTCAAAAATATATTCTACGAAGATCAGGAAATAGTCTTAACTGACCCGGAAAACTGCTTGTTCAACAAGTATATGCAAATAACCAATTTTGTTCAGAGTTACCAATTTGAATTATACGATACAAACTTGAGCTTCTTCAATTGTACTTCAGCTGGGCATCGACACGTCCGCTACCGCTACAGGGAAGACTCGTATTCCCAAGATTTGGTCTCCTGTCCGATTTTCATTTCTGATTCTTTTGAAAGTGTCCTCGAATTAGATCTAACATCCTGTACCAAGATGTTCGACATCCCTTCGCCAATCCTTTTCACCGACGGGTATCCCTTGTATTTGAGATGGTTCAAACCAAATTGTTCTGAGTGCGAAGCTAAAGGCAAGAGATGTAAATGGAAGACCAACAACGACACAGGAGACATCGAATGTTTTGAATGCACACGAAAAAGAATTCACGTTCCTAAATCTCTTATTTTTGCTACTACAGGTTCGATCTTTTTGGGGCTGGTGGTCACAGCTGTCTTTATGAGCATTCTCTATTTTAGGGAAAAACAAGAAGATCAAGCAAGAGTGGACAAGTTTTTAGAGGACTACAGGGCAGAAAAGCCTGCAAGATTCACCTACGCCGACCTTAAAAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTGTTCAGAGGTAAACTTTCCAGTGAGATATCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCACATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTCTTTCCAAACGGTTCCTTACAAAGCTTCATATTTCCACCAGAAGACAAGGACCATTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACTCCAAAAATATCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCNAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCTAGAAACTTTGGAAACGTATCTTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCTTCTCCAGAAGATTTCCATGTTCTGTACCCTGATTGGATCCATAACCTGGTTGATGGAGATGTTCATATCCATGTTGAGAATGAAGATGATTTTAAGATTGCAAAGAAACTAGCAATTATTGGGCTTTGGTGCATACAGTGGCAGCCAGGGAATCGTCCATCCATAAAATCTGTGATACACATGCTAGAAACTCAAGAGGAAAACCAGATTGCCGTGCCTCCTAATCCATTTCACTCAACAACTTCCACAAAAGTTAAGGGACCCATTTCGACAAGACGACCTTTGCATTTGGAAGTGATTGAAGAATGA 1830 0.4186 MMASVLLLQRDSLLMKLSLMLILIRSGSAHNECHEENLSCGPNEPLIRFPFQLVKEMKEPCSYPRLCLSCTENNQTMLLLPTIKLQVKNIFYEDQEIVLTDPENCLFNKYMQITNFVQSYQFELYDTNLSFFNCTSAGHRHVRYRYREDSYSQDLVSCPIFISDSFESVLELDLTSCTKMFDIPSPILFTDGYPLYLRWFKPNCSECEAKGKRCKWKTNNDTGDIECFECTRKRIHVPKSLIFATTGSIFLGLVVTAVFMSILYFREKQEDQARVDKFLEDYRAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEISVAVKILNNTEGEGNEFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDKDHFLGWEKLQHIALGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPEDFHVLYPDWIHNLVDGDVHIHVENEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEENQIAVPPNPFHSTTSTKVKGPISTRRPLHLEVIEE* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1405 609 Gene3D Transferase(Phosphotransferase) domain 1 375 582 - -
Vra6g1405 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 609 IPR045874 GO:0004672
Vra6g1405 609 Pfam Wall-associated receptor kinase galacturonan-binding 33 101 IPR025287 GO:0030247
Vra6g1405 609 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Vra6g1405 609 Coils Coil 603 609 - -
Vra6g1405 609 PANTHER RECEPTOR-LIKE KINASE 21 609 - -
Vra6g1405 609 Pfam Protein tyrosine and serine/threonine kinase 302 569 IPR001245 GO:0004672|GO:0006468
Vra6g1405 609 Gene3D Phosphorylase Kinase; domain 1 273 374 - -
Vra6g1405 609 SUPERFAMILY Protein kinase-like (PK-like) 284 572 IPR011009 -
Vra6g1405 609 ProSiteProfiles Protein kinase domain profile. 300 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1405 Vra-Chr6 27613395 27622464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1405 243 583 Receptor kinase-like Gene Family AT1G66910 44.318 4.12e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1405 PK_Tyr_Ser-Thr 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1405 - - gmx:102662104 906.746