Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1404 ATGGTCTACCGTGGAGGATTTTTTGTAGCAATGTTTAGACCAGAGCAATCTGTTGGAATTTATTTCTCTGACAATGAAGGCGTCATGGAGTTTGAACCACGATTTGTTAAATTGGGACAGTGTGTTACATACTTCATAGTTAGATATGTTGCTGGCACCATGTTGTTTATTGTTTTTTTGGTATACAAATGGAGAAGAAGACATTCGTCAGTATACGAAAATATTGAAAATTATTTAGAGCAAAATAGCTTGATGCCTATTCGATACTCATACAAGGAGATTAAGAAGATGGCCAAAGGTTTCAATGAAAAGTTGGGTGAAGGAGGTTATGGCTCTGTATTCAAGGGGAAGTTGCGAAGTGGACCTTCTGTTGCCATAAAAGTATTACGAAATTCAAAAGGTAAAGGAGAAGATTTTATCAGTGAAGTTGCAACAATTGGAAGAATACATCACCAAAATGTAGTGCATTTAATTGGATATTGTGCTGAGGGCTCAAAACGTGCACTTGTCTATGACTTCATGCTCAATGGATCTCTTGACAAATTTATATTTTCTACAAAAGGGAATGTACATTTAACCTATGACACAATACATGATATAGCAATTGGAGTAGCACGTGGAATTTCGTATCTACATCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCACAACATCCTGCTTGATGAAAAATTCACTCCAAAGATATCTGATTTTGGATTGGCAAAACTATATTCAACAGATAAAAGTGTTGTGAGTATGACAGCAGCAAGAGGAACAATTGGGTACATGGCTCCAGAGTTGTTTTATAAAAATGTCGGAAGAATATCACATAAGTCTGATGTTTATAGTTTTGGAATGTTTTTGATGGAAATAGCAAGCAAGAGGAAAAACCTAAACCCCCATGCTGAGCATTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGATAAAGGGAAAGATACAGAAATGGAAGATGTCACCGAGAATGAGAACAAAATTGTAAAAAAGATGATCATAGTTTCACTTTGGTGTATACAATTGAAACCAAATGATCGCCCTTCCATGAATAAAGTTTTGGAAATGCTTGAAGGAGACATTGCAAACCTAAAATTACCTCCAAAGCCTTCTCTGTATCCACATGAAACATTGGAAGATGATGAAAGAATATCCTCTCACCAAACAACATTGTCTGACTTTGTTGGTTCTTCAAGTTATTAA 1239 0.3592 MVYRGGFFVAMFRPEQSVGIYFSDNEGVMEFEPRFVKLGQCVTYFIVRYVAGTMLFIVFLVYKWRRRHSSVYENIENYLEQNSLMPIRYSYKEIKKMAKGFNEKLGEGGYGSVFKGKLRSGPSVAIKVLRNSKGKGEDFISEVATIGRIHHQNVVHLIGYCAEGSKRALVYDFMLNGSLDKFIFSTKGNVHLTYDTIHDIAIGVARGISYLHHGCEMQILHFDIKPHNILLDEKFTPKISDFGLAKLYSTDKSVVSMTAARGTIGYMAPELFYKNVGRISHKSDVYSFGMFLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLDKGKDTEMEDVTENENKIVKKMIIVSLWCIQLKPNDRPSMNKVLEMLEGDIANLKLPPKPSLYPHETLEDDERISSHQTTLSDFVGSSSY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1404 412 ProSiteProfiles Protein kinase domain profile. 99 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1404 412 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 43 396 - -
Vra6g1404 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vra6g1404 412 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 396 IPR045874 GO:0004672
Vra6g1404 412 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Vra6g1404 412 SMART serkin_6 99 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1404 412 Gene3D Transferase(Phosphotransferase) domain 1 174 382 - -
Vra6g1404 412 SUPERFAMILY Protein kinase-like (PK-like) 83 370 IPR011009 -
Vra6g1404 412 MobiDBLite consensus disorder prediction 384 412 - -
Vra6g1404 412 Pfam Protein kinase domain 102 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1404 412 Gene3D Phosphorylase Kinase; domain 1 72 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1404 Vra-Chr6 27580219 27613265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1404 49 411 Receptor kinase-like Gene Family AT5G38260 45.528 2.08e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1404 Pkinase 8.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1404 - - vun:114194845 707.597