Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1402 ATGTGGAGAGAGAGAGCATTGATAGTGTTGGTGGTTCTACTCCACCAAATTCATGGAGGAGATGGTTGCTCCCCCAGTTCCTGTGGCAAAGTCACCAACATATCTTATCCATTCCGATTGAAAGGAGACCCAGAAGGGTGCGGTCGGTATGAGCTATCTTGTGAAAACAATATAACGGTGTTATCTCTGTTATCTGGAACATTTCATGTGGAGGCCATCAACTACAATAATTTCACAATCCGACTGGTGGATCCTGGACTTCAACCCACGAACTGCTCCTCCCTTCCCCGCTATTCTTTGTCTCCCTCCAATTTCACTGATCTTTCCCTAGACGCCTTGCGTCCCTTCGGTGGATTTCTGTATAACTTTTATCCTTATTACGATGAGTTTTTGTACGAGCATATAGTATTTTTGAATTGTAGTCATGGAGTGAGTGGGAACAGTAAGTATGTGGATACTGGTGGATGCGTGAATTGGGAGTCCAAAGGTTACATATACGCTATGGCTGTTGATGACCTATTAGCAAAGGACTTGGAAGTTGGTTGTCAAGTAAAGCAGGTTACTGGCACATCTTGGTGGGGTTTGGAAACATATGAATATTCCTATGCCACGATCCACACAGCGCTACTTTATGGATTTCAGCTTTCATGGATTCCTCTCGCCTGTCATGATCATTGTTCAGGTCCTTATGACTGCTATTTCAATTCTTCCAGCAAGAAGCTTCAATGCCAGGGTATGACATAA 744 0.4382 MWRERALIVLVVLLHQIHGGDGCSPSSCGKVTNISYPFRLKGDPEGCGRYELSCENNITVLSLLSGTFHVEAINYNNFTIRLVDPGLQPTNCSSLPRYSLSPSNFTDLSLDALRPFGGFLYNFYPYYDEFLYEHIVFLNCSHGVSGNSKYVDTGGCVNWESKGYIYAMAVDDLLAKDLEVGCQVKQVTGTSWWGLETYEYSYATIHTALLYGFQLSWIPLACHDHCSGPYDCYFNSSSKKLQCQGMT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1402 247 Pfam Wall-associated receptor kinase galacturonan-binding 23 84 IPR025287 GO:0030247
Vra6g1402 247 PANTHER OS01G0690200 PROTEIN 5 233 - -
Vra6g1402 247 PANTHER OS01G0113900 PROTEIN 5 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1402 Vra-Chr6 27542102 27542845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1402 23 184 C3H Transcription Factor Family AT2G46495 29.167 3.27e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1402 - - var:108337757 367.081