Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1401 ATGCGAACACAGATCCCAGCTACGCAGCACATTCCACACGAACGCCAACAGGACAAATGTTCTCTGAGAAGAAGAACCAAGAACTTCAAAGAGATAGCAGCTGCACAGGTTGGAGGGGAGGATAGGAAGATGGGATTGCTTAGATCAATAGGTAGACAAGACCAAGATAATGAAGAATTTGATTTCAATAGATATGGATCTGGATATACATCAGGGTTAATTGCGTTGGGACACTATGGTATACCATACTTCATAGTTAGAAATGTTGCTGGCACCATATTGTTTATTGTGTTTTTGGTATACAAATGGAGAAGAAGACATTCGTCAGTATATGAAAGTATTGAAAATTATTTAGAGCAAAATAGTTTGATGCCTATTCGATACTCATACAAGGAGATTAAGAAGATGGCCAAAGGTTTCAATGAAAAGTTGGGTGAAGGAGGTTATGGCTCTGTATTCAAGGGGAAGTTGCGAAGTGGACCTTCTGTTGCCATAAAAGTGTTACGAAATTCAAAAGGTAAAGGAGAAGATTTTATCAGTGAAGTTGCAACAATTGGAAGAATACATCACCAAAATGTAGTGCATTTAATTGGATATTGTGCTGAGGGCTCGAAACGTGCCCTTGTCTATGACTTCATGCTCAATGGATCTCTTGACAAATTTATATTTTCTAAAGAAGGGAATCTAAATTTAACCTATGACACAATACATGATATAGCAATTGGAGTAGCACGTGGAATTTCGTATCTACATCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCACAACATCCTGCTTGATGAAAAATTCACCCCAAAGATATCTGATTTTGGATTGGCAAAACTATATTCAACAGATAAAAGTGTTGTGAGTATGACAGCAGCCAGAGGAACAATTGGGTACATGGCTCCAGAGTTGTTTTATAAAAATGTCGGAAGAATATCACATAAGTCTGATGTTTATAGCTTTGGAATGTTTTTGATGGAAATAGCAAGCAAGAGGAAAAACCTAAACCCCCATGCAGAGCATTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGATAAAGGGAAAGATATAGAAATGGAAGATGTCACCGAGAATGAGAACAAAATTGTAAAAAAGATGATCATAGTTTCACTTTGGTGTATACAATTGAAACCAAATGATCGCCCTTCCATGAATAAAGTAGTGGAAATGCTTGAAGGAGACTTTGCAAACCTAAAATTACCTCCAAAACCTTCTCTGTTTCCTCATGAAACATTGGAAGATGATGAAAGAATATCCTCTCATCAACCAACATTGTCTGACTTTGTTGGTTCGTCAAGTTATCCACTTAAGATTGTCTCAAATGAAAGTATGTGA 1386 0.3716 MRTQIPATQHIPHERQQDKCSLRRRTKNFKEIAAAQVGGEDRKMGLLRSIGRQDQDNEEFDFNRYGSGYTSGLIALGHYGIPYFIVRNVAGTILFIVFLVYKWRRRHSSVYESIENYLEQNSLMPIRYSYKEIKKMAKGFNEKLGEGGYGSVFKGKLRSGPSVAIKVLRNSKGKGEDFISEVATIGRIHHQNVVHLIGYCAEGSKRALVYDFMLNGSLDKFIFSKEGNLNLTYDTIHDIAIGVARGISYLHHGCEMQILHFDIKPHNILLDEKFTPKISDFGLAKLYSTDKSVVSMTAARGTIGYMAPELFYKNVGRISHKSDVYSFGMFLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLDKGKDIEMEDVTENENKIVKKMIIVSLWCIQLKPNDRPSMNKVVEMLEGDFANLKLPPKPSLFPHETLEDDERISSHQPTLSDFVGSSSYPLKIVSNESM* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1401 461 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 66 438 - -
Vra6g1401 461 CDD STKc_IRAK 144 410 - -
Vra6g1401 461 Pfam Protein tyrosine and serine/threonine kinase 140 408 IPR001245 GO:0004672|GO:0006468
Vra6g1401 461 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Vra6g1401 461 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g1401 461 PANTHER RUST RESISTANCE KINASE LR10-RELATED 66 438 IPR045874 GO:0004672
Vra6g1401 461 SMART serkin_6 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1401 461 ProSiteProfiles Protein kinase domain profile. 138 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1401 461 Gene3D Transferase(Phosphotransferase) domain 1 213 415 - -
Vra6g1401 461 SUPERFAMILY Protein kinase-like (PK-like) 122 409 IPR011009 -
Vra6g1401 461 Gene3D Phosphorylase Kinase; domain 1 112 212 - -
Vra6g1401 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1401 Vra-Chr6 27524950 27529630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1401 91 436 Receptor kinase-like Gene Family AT1G66910 46.944 1.04e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1401 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1401 - - vun:114194845 674.085