Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1400 ATGATGGCAAGTGTCTTACTCCTCCAACGTGATTCTGTATTGATGAAGCTATCGCTAATGCTTATTCTTATCAGAAGTGGCAGCGCTCATAACGAGTGCCATGAGGAAAATTTGTCTTGTGGGCCGAACCAACCCCTTATCAGATTTCCCTTCCAACTCGTAAAGGAGATGAAGGAGCCATGCAATTATCCCCGTCTTTGTCTTTCTTGTACTGAAAAAAATGAGACCATGCTTCTGCTTCCAACGATCAAACTCCAAGTCAAAGATATACGCTACGAATATCAGCTAATTGTCTTAACTGACCCGGAAAACTGCTTTTTCAACAAGTTTATGCAAATCTTAAATTTTGTTCAGAGTTACCAATTTGAACCAGCATATACAAACTTGAGCTTCTTCAATTGTACTTCAGCTGGGCATCGACACCTCCGCTACCTCTACAGGGAAGGTTCATATTCCCAAGATTTGGTCTCCTGTCCGATTTTCATTTCTGATTCTTCTGAAAGTGTCCTCGACTTAGATCTAACATCCTGTACCAAGATGTTCGACATCCCTTCGCCAATCAGTTTCACCTACACGTATCCCTTCTATTGGAGATGGTTAAAACCAAATTGTTCTGAGTGCGAAGCTAAAGGCAAGAGATGTAAATGGAAGACCAACAACGACACAGAAGGAGACATCGAATGTTTTGAATGCACACGAAAAACAATTCACGTTCCTAAATCTCTTATTTTTGCTACTACAGGTTCGATCTTTTTAGGTCTGGTAGTCACTGCTGTCTTTAAGAGCATTGTCTATTTTAGGGAAAAACAAGAAGATCAAGCAAGAGTGGACAAGTTTTTAGAGGACTACAGGGCAGAAAAGCCTGCAAGATTCACCTACGCCGACCTTAAAAGAATCACCAATGGCTTTAAGGAAATGTTAGGAGAAGGAGCTCATGGGGCTGTGTTCAGAGGAAAACTTTCCAGTGAGATACCCGTGGCTGTGAAGATCCTCAACAATACAGAGGGAGAAGGGAATGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCATCANATCAACGTGGTGCGCTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTNTACAATTTCTTTCCAAACGGTTCTTTACAAAGCTTCATTTTTCCTCCAGAAGACAAGGACCATTTCCTTGGCTGGGAGAAGCTTCAACACATTGCTATTGGTATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGCAATCATCCCATTATTCACTTTGACATCAATCCTCACAACGTGTTACTTGATGACAACTTCACTCCAAAAATATCTGATTTTGGCTTAGCCAAATTGTGTTCCAAGAATCCCAGTTTGGTGTCGATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCTGAAGTCTTCTCTAGAAACTTTGGAAACGTATCTTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGTGGGAGGAAGAATGTGGACATGTCATCTCCAGAAGATTTCCATGTTCTGTACCCAGATTGGATCCATAACCTGGTTGATGGAGATGTGCATATCCATGTTGAGGATGAAGATGATTTTAAGATTGCAAAGAAACTAGCAATTATTGGGCTTTGGTGCATTCAGTGGCAGCCAGGGAACCGTCCATCTATAAAATCTGTGATACACATGCTAGAAACTCAAGAGGAAAACCAGATTGCCGTGCCTCCTAATCCCTTTCACTCAGCAACTTCCACTGCTAAGGGACCCATTTCGACAAGACGACCTTTGCATTTGGAAGTGATTGAAGAATGA 1830 0.4175 MMASVLLLQRDSVLMKLSLMLILIRSGSAHNECHEENLSCGPNQPLIRFPFQLVKEMKEPCNYPRLCLSCTEKNETMLLLPTIKLQVKDIRYEYQLIVLTDPENCFFNKFMQILNFVQSYQFEPAYTNLSFFNCTSAGHRHLRYLYREGSYSQDLVSCPIFISDSSESVLDLDLTSCTKMFDIPSPISFTYTYPFYWRWLKPNCSECEAKGKRCKWKTNNDTEGDIECFECTRKTIHVPKSLIFATTGSIFLGLVVTAVFKSIVYFREKQEDQARVDKFLEDYRAEKPARFTYADLKRITNGFKEMLGEGAHGAVFRGKLSSEIPVAVKILNNTEGEGNEFINEVGIMGKIHXINVVRLLGFCAEGLHRALVYNFFPNGSLQSFIFPPEDKDHFLGWEKLQHIAIGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPEDFHVLYPDWIHNLVDGDVHIHVEDEDDFKIAKKLAIIGLWCIQWQPGNRPSIKSVIHMLETQEENQIAVPPNPFHSATSTAKGPISTRRPLHLEVIEE* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1400 609 Pfam Protein tyrosine and serine/threonine kinase 303 570 IPR001245 GO:0004672|GO:0006468
Vra6g1400 609 Pfam Wall-associated receptor kinase galacturonan-binding 33 101 IPR025287 GO:0030247
Vra6g1400 609 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vra6g1400 609 Gene3D Transferase(Phosphotransferase) domain 1 376 583 - -
Vra6g1400 609 ProSiteProfiles Protein kinase domain profile. 301 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1400 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 609 IPR045874 GO:0004672
Vra6g1400 609 Gene3D Phosphorylase Kinase; domain 1 274 375 - -
Vra6g1400 609 SUPERFAMILY Protein kinase-like (PK-like) 285 573 IPR011009 -
Vra6g1400 609 PANTHER RECEPTOR-LIKE KINASE 21 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1400 Vra-Chr6 27505361 27508879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1400 2 584 Receptor kinase-like Gene Family AT5G38260 33.547 2.77e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra6g1400 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1400 - - gmx:100813645 898.271