Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1397 ATGTTGAAGACGAAGACGTTGAAGATGAAAGCATTCCAAGGCGCCAATGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTGCACGATGCCGTTAAAGATAACGGTGCTCAACTCCACCTCTGCTGCGATCCCTCCCGTAACGGCCCCGACGATTACCACATCATTGCTTCCAGTAAACACGAGAAGTTCGATGATCTCAAATCCAAGGGCTGCAAGTTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAGGCCTTTGCCTAAACAAGGCTTCACTTGTTGCCTTGCCATGGACGGCGTCAAAGTACTTGCATCTGGCTTTGATACGGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCAGAAATGGGGGGAGTTCTACACACTAAAACATCGTTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCCAGGAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGCTAAAACAATGCTCAGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCTGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGGCTCCACAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAAGAAATGGTTTGATCAATCAATTGCTCGGAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGATTCACAAACCCGTATATTTGCTAAGGAGGCAGATGCTGAACCTCCATTGCAGACCAGTGGTGAATTGAACCTTGACAATATTGTTGCTGATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTTAGAAATGCGGAAACTAATTAATATTGTGCGCAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTCGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCATAAAAAGAAAGAAGTCCCAGTGCTTAGGAGACACATTGCGTATGATCTACTTCAGCCAAAAGCAAGCTTGGTAAAAGCTGTAACAGAAAGCACATCTATGGATCACAGTAAAAGCTCCAGCTGTCATCAAAGCTCGCACCAGGTGGACTTTGAAAATGTGAAGCCAGAATCTTTAGAGAAAAGAAAAGAACAGATAAAAGATATGGATATAAATGGTCACTCATTCCGTAAAGCAAATTGTAGAACAATGTTGCAAAATCAACTTCCTGATAATAAATTGAGCACACAAGGAATGAGCCAGCATGACTTCAGTGTTCAATATGAAAAATCAGCAAATGTTTTCAGAGGGAAACTGTTTTGTTTTTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGGTAATAAGTGGGCAAGCAGAACAGATTGTCCACTATACTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCGAAGAGTTTGTCTGTTTCCAGTCACTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGGTAGTCACATTCTTTATTCTCCACTTCCCTGCCATGTTCCCTTGCCTGGATTTGAAAGATTCAGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTACTAGGAGCTAAATTTGGGGAGAAGTTGCATAAGAAGGTTACGCATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTCGTAAATGGGGGATTCAGTCAGTTACATGCGAATGGATATTTGAATGCGTCAAACAGAATGGGGTTGTTGCCGTTGATCAATTTTTACCAAAAGAAGTAACCGCTCAAGATCGAGAGGCAGGACTTTGCACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAATTGTCAAGCCAATCACAAATTTTGAGAGGCATCACAGATAAAAATGTGGGTTGTGGAGTTGGTAATCATGAGACCAATTTTAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTAGAAGAACCTTGCCTATCCAACAAGATGCCTTCGGCATCAAATTCAGGTATTCATGCCTATGGAAAGAATTTTTCTGAAGACAATACGCTAATAGATGGTGGAGAGGTTTGTCGTACTGTTCCTGATGTTGCTGCTGCAATTGAAGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCCCCAGCACATACAGGGTGTGAGAGAGGTATTTACCCGTCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCCCATACCGTTTTTGGGTTATCTAAACACTGGTTAAACAGTACTGAGAGCATATATTCTTATAGAAATGACAGAAAGGAAGATGATGGGGAGGCTTCTCAAGACAGACCAGCAGGAATATACGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTGTCAGGAAGGCAAAGCCTTATAGATAAATACCGAACTCGAAGTAGCACGCAGTGA 2865 0.4168 MLKTKTLKMKAFQGANVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGPDDYHIIASSKHEKFDDLKSKGCKLLGPRCVLSCAKGGRPLPKQGFTCCLAMDGVKVLASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLARKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPQGDKYKVAKRWGHIHIVIKKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQHSQEKDIGKLQSAASSDSQTRIFAKEADAEPPLQTSGELNLDNIVADDSESDDNDLYLSECRILLVGFEALEMRKLINIVRKGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTSWLEDCDHKKKEVPVLRRHIAYDLLQPKASLVKAVTESTSMDHSKSSSCHQSSHQVDFENVKPESLEKRKEQIKDMDINGHSFRKANCRTMLQNQLPDNKLSTQGMSQHDFSVQYEKSANVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGQAEQIVHYTVECHGVTPMLTGDSKSLSVSSHWIRSCLEAGSLLDVGSHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLHKKVTHLLCKFTNGPKYDGARKWGIQSVTCEWIFECVKQNGVVAVDQFLPKEVTAQDREAGLCTVSQFPTQAAQMISDMPSQLSSQSQILRGITDKNVGCGVGNHETNFKKPSVYSKKARLVEEPCLSNKMPSASNSGIHAYGKNFSEDNTLIDGGEVCRTVPDVAAAIEDLLEQTSKMHGQRSPAHTGCERGIYPSDLSVLGEDNSNPHTVFGLSKHWLNSTESIYSYRNDRKEDDGEASQDRPAGIYDGFSETQTESQVVSYEEDLSGRQSLIDKYRTRSSTQ* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1397 954 Pfam twin BRCT domain 195 258 IPR001357 -
Vra6g1397 954 Pfam twin BRCT domain 640 701 IPR001357 -
Vra6g1397 954 Gene3D BRCT domain 41 99 IPR036420 -
Vra6g1397 954 Gene3D BRCT domain 532 629 IPR036420 -
Vra6g1397 954 ProSiteProfiles BRCT domain profile. 187 276 IPR001357 -
Vra6g1397 954 ProSiteProfiles BRCT domain profile. 105 189 IPR001357 -
Vra6g1397 954 Gene3D BRCT domain 332 435 IPR036420 -
Vra6g1397 954 ProSiteProfiles BRCT domain profile. 346 438 IPR001357 -
Vra6g1397 954 CDD BRCT_TopBP1_rpt2_like 634 709 - -
Vra6g1397 954 SUPERFAMILY BRCT domain 191 276 IPR036420 -
Vra6g1397 954 MobiDBLite consensus disorder prediction 921 936 - -
Vra6g1397 954 SUPERFAMILY BRCT domain 346 432 IPR036420 -
Vra6g1397 954 Pfam BRCA1 C Terminus (BRCT) domain 105 175 IPR001357 -
Vra6g1397 954 Gene3D BRCT domain 191 277 IPR036420 -
Vra6g1397 954 CDD BRCT_TopBP1_rpt2_like 191 266 - -
Vra6g1397 954 MobiDBLite consensus disorder prediction 460 477 - -
Vra6g1397 954 SUPERFAMILY BRCT domain 64 188 IPR036420 -
Vra6g1397 954 SUPERFAMILY BRCT domain 601 720 IPR036420 -
Vra6g1397 954 ProSiteProfiles BRCT domain profile. 636 719 IPR001357 -
Vra6g1397 954 Gene3D BRCT domain 102 190 IPR036420 -
Vra6g1397 954 MobiDBLite consensus disorder prediction 460 483 - -
Vra6g1397 954 Gene3D BRCT domain 630 724 IPR036420 -
Vra6g1397 954 SUPERFAMILY BRCT domain 538 625 IPR036420 -
Vra6g1397 954 Pfam BRCT domain, a BRCA1 C-terminus domain 537 619 IPR001357 -
Vra6g1397 954 ProSiteProfiles BRCT domain profile. 535 623 IPR001357 -
Vra6g1397 954 SMART BRCT_7 348 428 IPR001357 -
Vra6g1397 954 SMART BRCT_7 9 91 IPR001357 -
Vra6g1397 954 SMART BRCT_7 537 613 IPR001357 -
Vra6g1397 954 SMART BRCT_7 633 709 IPR001357 -
Vra6g1397 954 SMART BRCT_7 189 266 IPR001357 -
Vra6g1397 954 SMART BRCT_7 102 179 IPR001357 -
Vra6g1397 954 CDD BRCT 108 175 - -
Vra6g1397 954 MobiDBLite consensus disorder prediction 901 954 - -
Vra6g1397 954 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 12 941 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1397 12 952 Core DNA Replication Machinery Family AT1G77320 49.116 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1397 K10728 - gmx:100804966 1514.21