Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1395 ATGTCGAGGATTTGCGTGAAGAATCTTCCCAAACATGTTGCGGAGGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGACGGTAAGAGTCGCCAATTTGCGTTTATAGGGTATCGAACAGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTACATGTGAGGTAGCTCGAAAACTTGGAGATGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAAACGACAAAGAGACTGTGCCGGATGTGGGGAAACCTGCTAGAGCTAAGGGCAGGAAAGAAAATTTGAAGAATGGTGTGGATGTTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACCTCCGGTTTGACCAGTGTTGACAACAACCGAGGAGTCTCAAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGACAGTGGCTCATTGGAAGATGGATTTCTTGATATTTCCGAACCCAGCGGCAAGTCACTTGAGCCTGAACGTGACGAGGTCATTTCAGATATGGATTATTTTAAGAGTAGGGTGACGAAAGAGTGGTCTGATTCTGAAAGTAGTGATAAAGATGATGACGACAATAATGATACCGATGCCTCATCTGATGACAATGATGACAAAGATGATAATAGTGATGTTAACGAAGATGAAAATATAAGTCATCCAAGAAATGATTCTCGAGAGGTAGACGTAGAGGGCAAAGAAGATACTAGTAGAGAGAAGGTTACCCATGAAAAATCTCAAGTAAATGTGACTGAGCATGGGGGCCAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAATCACATTGGTACTATCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGAATTTGCAGACAGGGCTTTGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCCAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCGTGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTAGATAAAAGTGATTTACTTGACGGAGAAGCGGACGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAAAATGCTGGTGTAAATGTCGAGGCCTTGGAAGAACTTGCTAATAACAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCACTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGATCCAGACAGAGTAGAGGCTCGGTCCTTATTTGTCAAGAACATAAATTTCAAGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTCATTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCGCAGAAACAAAAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTAATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACGACCACAATGGATTTCAAGGTGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGATTTGATGACTAG 2544 0.4029 MSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSFLRTSKITCEVARKLGDENLPRPWSRHSKKKNDKETVPDVGKPARAKGRKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVDNNRGVSNKDNEGASVSTDDSGSLEDGFLDISEPSGKSLEPERDEVISDMDYFKSRVTKEWSDSESSDKDDDDNNDTDASSDDNDDKDDNSDVNEDENISHPRNDSREVDVEGKEDTSREKVTHEKSQVNVTEHGGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFNHIGTISQVHLVVDKDTKRSKGIAYILYTAPEFADRALKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDGEADDLAVRIALGETQVISETKNAFKNAGVNVEALEELANNKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNINFKTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDAQKQKTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTASQFSDDHNGFQGAIKLSKKRKDVDILDEGKMKFGRFDD* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1395 847 SMART rrm1_1 502 569 IPR000504 GO:0003723
Vra6g1395 847 SMART rrm1_1 622 700 IPR000504 GO:0003723
Vra6g1395 847 SMART rrm1_1 307 380 IPR000504 GO:0003723
Vra6g1395 847 SMART rrm1_1 722 793 IPR000504 GO:0003723
Vra6g1395 847 SMART rrm1_1 3 75 IPR000504 GO:0003723
Vra6g1395 847 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 824 - -
Vra6g1395 847 Gene3D - 614 716 IPR012677 -
Vra6g1395 847 SUPERFAMILY RNA-binding domain, RBD 717 803 IPR035979 GO:0003676
Vra6g1395 847 CDD RRM3_RBM19_RRM2_MRD1 307 380 - -
Vra6g1395 847 CDD RRM5_RBM19_like 621 702 IPR034423 -
Vra6g1395 847 MobiDBLite consensus disorder prediction 146 294 - -
Vra6g1395 847 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 824 - -
Vra6g1395 847 MobiDBLite consensus disorder prediction 191 220 - -
Vra6g1395 847 Gene3D - 1 122 IPR012677 -
Vra6g1395 847 Gene3D - 483 596 IPR012677 -
Vra6g1395 847 Gene3D - 717 818 IPR012677 -
Vra6g1395 847 SUPERFAMILY RNA-binding domain, RBD 304 388 IPR035979 GO:0003676
Vra6g1395 847 SMART rrm2_1 307 380 IPR003954 GO:0003676
Vra6g1395 847 SMART rrm2_1 3 75 IPR003954 GO:0003676
Vra6g1395 847 SMART rrm2_1 622 702 IPR003954 GO:0003676
Vra6g1395 847 SMART rrm2_1 722 793 IPR003954 GO:0003676
Vra6g1395 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 723 790 IPR000504 GO:0003723
Vra6g1395 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 564 IPR000504 GO:0003723
Vra6g1395 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 623 697 IPR000504 GO:0003723
Vra6g1395 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 378 IPR000504 GO:0003723
Vra6g1395 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Vra6g1395 847 CDD RRM6_RBM19_RRM5_MRD1 721 795 - -
Vra6g1395 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Vra6g1395 847 Gene3D - 209 394 IPR012677 -
Vra6g1395 847 MobiDBLite consensus disorder prediction 83 125 - -
Vra6g1395 847 Coils Coil 396 416 - -
Vra6g1395 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Vra6g1395 847 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Vra6g1395 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 721 797 IPR000504 GO:0003723
Vra6g1395 847 CDD RRM4_RBM19_RRM3_MRD1 501 572 - -
Vra6g1395 847 MobiDBLite consensus disorder prediction 398 417 - -
Vra6g1395 847 CDD RRM1_MRD1 2 77 - -
Vra6g1395 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 621 704 IPR000504 GO:0003723
Vra6g1395 847 MobiDBLite consensus disorder prediction 83 122 - -
Vra6g1395 847 MobiDBLite consensus disorder prediction 387 417 - -
Vra6g1395 847 MobiDBLite consensus disorder prediction 221 248 - -
Vra6g1395 847 MobiDBLite consensus disorder prediction 146 177 - -
Vra6g1395 847 SUPERFAMILY RNA-binding domain, RBD 610 709 IPR035979 GO:0003676
Vra6g1395 847 MobiDBLite consensus disorder prediction 249 283 - -
Vra6g1395 847 SUPERFAMILY RNA-binding domain, RBD 498 589 IPR035979 GO:0003676
Vra6g1395 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 573 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1395 Vra-Chr6 27386931 27395439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1395 614 813 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 9.71e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1395 K14787 - gmx:100798742 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1395 6 27386931 27395439 Vra6g1395 6 27386931 27395439 ECH